BAC Information

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BAC

Clone NameMSMg01-323D01
Chromosome12 (Build37)
Map Location 106,507,088 - 106,507,682
singlet/doubletsinglet
Overlap genenone
Upstream geneEG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1
Downstream geneLOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323D01.T7 (MSMg01no323_d01.b1)MSMg01-323D01.TJ (MSMg01no323_d01.g1)
ACCAG441681AG441682
length1,2171,240
length of high quality
(start - end)
---594 (136 - 729)
definitionCHROMAT_FILE: MSMg01no323_d01.b1 PHD_FILE: MSMg01no323_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:27 2005CHROMAT_FILE: MSMg01no323_d01.g1 PHD_FILE: MSMg01no323_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGCGGNGGGGNCCATGCGCCTAACACTCCTAAGGGAGAGGACCGCGGA
ATCTGTTAGGAGGNAAACCATTCAGGGGNGNNNGGNNNNNNGNGNNGNNN
NNNNNNTCATAAAAAAGNNNNNGNNNNNNNGNNNNNNNGNNNNGGGNNGG
GNNNGNGNNGNNGNNGNNNNNGGNNNNNNGNGNGNNNNGNGGGGNNGGNG
NNGNNNNGNNNGGNGNNNNNGGNNNNNNGGAGNGNNNNGGGGNGGGNNGG
GNNGGNGGGNNNNNGNNNNNGGNGGNNNNGGNGGNNGNNGGNNGAGNNGN
NNNNNNGGGNNNNNNNNNNNNGAGGTTTNNNGNGGNGNGNNNNNNNNGNG
NNNGNNNGNNNNNGGGNGGNNGGGNGGGGGNGNNNNNNGNNNNNNTTTTT
TTTTTTGGNNNGGNGNNGGNGNGNGGNNGGNNNGNNGGGGGGNGGGGGGG
GGGNNNNNNNNNGNNNNNGGGGNNNNGGNGNNNNNGGNNNGGGGGGGGGG
GGNNNGGGNNNNNGGGNNNNNGGNNNGGGNGGGNGGGNGNGNNNNNGGNN
NNGGGGGNNNGGGNNNGNNGNNNNGGNNNNGGGGGNGGNNGGGGGGGGGN
NNGGGGGGGGNNNNNNNGGNNNNNGGGNNNGNGGNNNNGGNNNNNGGNNN
GNGGNNGGNNNNNNNNGGNGNNNNNNNNNGNNGGNNNNNNNNNNGGNNGG
NGGNNNNGGGGGNNNNNNNNGGGNGNGGNNGNNNNNGGNGGGGGGGGGGG
TGTTTTGGGGNNGGNGGGGGTTTTTTTTTTGNGGGNGGGGGGGGGGGGGG
GGGGGGGNGGGNGGNNGGGGGNGGGNGGGGGGGGGGGGGGGGGTGGGTTT
TTTTTTTTTTTTTTTTTTGNGNGGGGTGGGNNGGGGGGNGGGGGGGNTTT
TTGGTTGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGG
GGGTGGGGGGGGGTGGGGGGGGTGGNGGGGGGGTGGGTGGGGGGGGGGGG
GGGGGNGGGGGGGGGGGGGGTGGTTTGGGGGGGGGGGGGGGTGGNGGNGG
GTGGGTGGGGTGGGGTGGGGGGGGGGGGGGGGNGGTGGGGGGTGTGTGGG
GGGGGGGGGGGGGGGTGGGGNGGGGGGGGGGGGGGGGGGGGGGGTGGGGG
GNNTGTGGGGGTGGGGT
NNCAGTTCNNNNNNGGTGATGGAGNCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAACCCCTGGTTGTGGTG
CGGGATAGGCAGCAAGCCTTTAGAGGACCCCGCGCAAGCTCTAGGGAGGA
TTACTTGATGTGTAGTGTCCATATAAGCATCCTTGCTCTGGCATCGTTAT
AAAATGGCGACACGTTGGCAGGAAATAAGCACCTGCTTTTGGTCCTACAC
TTAGGAAATGGCAGAATGAAGCCTGATGGCAGATTTCCTGGCTCTGAACC
CTGGGCTCCTTCTGAAATCTCCGTGGTGTGGCTGTGTTTGTCACGGTGAT
GTCTGTTGTGATTATCCATATGCTGCCTGGGTATCTCTTGAAGTCACCTT
CTTTGGTATTTTTTTGGTAACAATCGCAGGTCATTTAAGTTCCGGTCCCT
GAAGATGATAGGAACGTGCCCCGTGCTCAACACAGAACAGCTCTGGTCAC
AGAAGTGTGTGGGGCTTTCTCCATGCCCACTCATTCTGTCTCCTCATAAT
CTGTCACTCACAACCTGCTCACAGATCTTAGAGAACATTCCACTTATTTT
TTACCCACTCGTAAAGGTTGGGACTTGGGAACCAAGAGGTGGGAGAAGCA
CTGGGGGAAAGCTGAGGCTAGAGAAGGAGCAGAGAGTGCCCGTGCTTGGG
ATGCATGCTCCTTCTGCACTGCCGAAGCTCTCCAAGCCCCGTAGCTCGGG
AGGATGTCATTCTACCCATGACTGCTGTTAGCGCTACCTCCAGCCCCCTC
AATCCTTTTGGCGGAGCACTCTGGAAATACCTCATATCTGCTCTTGCTGG
CAAATAAATTCCTACAAATCCCACTGCCAAGTGCTTCGGGAAAACAAGTG
AAGTCTTTATCACCCCACAGGTCTCAAGAGACCAGGCTTAAAACCCATTA
TTAGGAACTAAGACTCCCCTATTCTTCCAAAGGAATTTCAAGACCTGGGC
TATGGAAAGGTTCAGGAACTAAGGCGCCGGAACTCAAATGGTCCCGGGAT
CCCTTCTGTAAAGGAAAAAATTGATCCTCTAAATGAAATCCTGATTTGCT
CTCGAGTCCCTCCTCGTTTCCCTACAATAAAAAATCCCAAAAAAGGGTTT
TCTCCCTTTGCACCCCGGGGGGCTTGGTTCCCCTCGAAACACCCCTCCTA
TTTCTCGGGGCCCTCCTCCAAGGGCTTTTTTTATAAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_d01.g1 MSMg01no323_d01.g1 CHROMAT_FILE:
MSMg01no323_d01.g1 PHD_FILE: MSMg01no323_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:27 2005
         (594 letters)



>mm_chr12_106506888_106507882
          Length = 995

 Score = 1073 bits (555), Expect = 0.0
 Identities = 585/599 (97%), Gaps = 9/599 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagctctagggaggattacttgatgtgtagtgtccatataagcatccttgctctggcatc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 795 aagctctagggaggattacttggtgtgtagtgtccatataagcatccttgctctggcatc 736

                                                                       
Query: 61  gttataaaatggcgacacgttggcaggaaataagcacctgcttttggtcctacacttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gttataaaatggcgacacgttggcaggaaataagcacctgcttttggtcctacacttagg 676

                                                                       
Query: 121 aaatggcagaatgaagcctgatggcagatttcctggctctgaaccctgggctccttctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaatggcagaatgaagcctgatggcagatttcctggctctgaaccctgggctccttctga 616

                                                                       
Query: 181 aatctccgtggtgtggctgtgtttgtcacggtgatgtctgttgtgattatccatatgctg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 615 aatctccgtggtgtggctgtgtttgtcatggtgatgtctgttgtgattatccatacgctg 556

                                                                       
Query: 241 cctgggtatctcttgaagtcaccttctttggta----tttttttggtaacaatcgcaggt 296
           |||||||||||||||||||||||||||||||||        |||||||||||||||||||
Sbjct: 555 cctgggtatctcttgaagtcaccttctttggtagagc----tttggtaacaatcgcaggt 500

                                                                       
Query: 297 catttaagttccggtccctgaagatgataggaacgtgccccgtgctcaacacagaacagc 356
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 499 catttaagttccggtccctgaagatgataggaacgtgccccatgctcaacacagaacagc 440

                                                                       
Query: 357 tctggtcacagaagtgtgtggggctttctccatgcccactcattctgtctcctcataatc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctggtcacagaagtgtgtggggctttctccatgcccactcattctgtctcctcataatc 380

                                                                       
Query: 417 tgtcactcacaacctgctcacagatcttagagaacattccacttattttttacccactcg 476
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtctctcacaacctgctcacagatcttagagaacattccacttattttttacccactcg 320

                                                                       
Query: 477 taaaggttgggacttgggaaccaagaggtgggagaagcactgggggaaa-gctgaggcta 535
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 319 taaaggttgggacttgggaaccaagaggtgggagaagcactgggggaaaggctgaggcta 260

                                                                      
Query: 536 gagaaggagcagagagtgcccgtgcttgggatgcatgctccttctgcactgccgaagct 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gagaaggagcagagagtgcccgtgcttgggatgcatgctccttctgcactgccgaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space:   575240
Effective search space used:   575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)