BAC Information

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BAC

Clone NameMSMg01-323E04
Chromosome12 (Build37)
Map Location 51,217,341 - 51,393,827
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm, LOC100039517, LOC636070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E04.T7 (MSMg01no323_e04.b1)MSMg01-323E04.TJ (MSMg01no323_e04.g1)
ACCAG441731AG441732
length1,1221,228
length of high quality
(start - end)		679 (134 - 812)691 (134 - 824)
definitionCHROMAT_FILE: MSMg01no323_e04.b1 PHD_FILE: MSMg01no323_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:36 2005CHROMAT_FILE: MSMg01no323_e04.g1 PHD_FILE: MSMg01no323_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,217,341 - 51,218,016)(51,393,137 - 51,393,827)
sequence
NCCCATCCNNNNNNNGTACAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATAAATGAGATGAACCCTGTAAAGCCTCAGACTTCC
AAGAGGCCAAGGTTATGAGCTTCTTGTACATCACTGGATTATGAAGATTT
TTAGCATACTAGAATGAAAGAGAGTAGGTGCCACATTGGCAACCTTCCAC
TGTAGGACCGAGCTGTTTACTTTTCTGAAAGAGTATGATTACCAAGATTT
GATTCCAATGGTATTTGAACCTCAGATATGACATTAGAAGGATGTCTTTT
AAAAATATGGTTCTGTCGGTTTTCTTCTGATTCTTATTCAGATTAGAGAG
AGTAACTAAATTGGAAAATAAACCTTAAAGAACTGAGATTAAAAACAGTA
GTGTGTTCCCAAACCAACATACTGGTCAATCTTTCTTTGTGTGGAAGACT
TGGGTACATAAAGGTTTATTGATTCTCAGATAAGAGAATGATCTACATAT
ATCAATAAGCTTCATTGCCTTTAAATTGTCCTTTGCCATAAGAGTTTTCT
TCACTATTTTGAACTATGAAACACTGTGAAATAAATATGACAGTGTTTAT
CTTTGTGGTATTTTAATATTTCACTTTCCTAATCTTCTACATTTTCATTT
AAAATATTTACCTCCCTCTAAGATGTTGTCAGGGCTTTCATTTTCATATC
TATGTATAGCCATAATATTGGCAGTGCCAGAAATGTGGCAGGATATCCAA
ATCCCAAAGGTAATACTACAGATTAGCAGTTTCCAATGGAGGGGTGTGTA
TATTATTTCCTAAATATTGTTGTATTGAAACTTCAGTGAAATCACATTTG
TAGCTTAAGCACAGATATTTAAAACCATAGCACTACTACATCCTAGACTT
GCATAACCTAAGGTGATCCTTTCCTTCCCTGGAACATCTGTGCTCCTTAC
CTTACTTAGTGGGAAAACATGTTTTCCCGTACATCCATTTAAACTTGGCC
ATTTTTGGAACTTTGAAGGACCTTACCAATCTCATTAAAAACCTTGGGTC
CATCCTTTTGGTGGCCACATAAATGGCCTATGGGTTTTTACCATGTGAAA
AAAAAGGGGGCTCCACAAATTC

NNCCTTTCCTNNNNNTTTCATGGATGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAAACCTCCATAGGCGTTG
CTTGTATATCTTAAGAACTTTAAAAGACCCCACATGAATTATATAAAATG
GATCTATCTATAAATCTTTAGAAAATAATGCATGCCACCTAATAATGCTT
GAACAGATATTTGTGGAATAAGTGGACATAACATACATAATAAAAATTTG
CATTCATTCTTCCTTTCTTATAACACACTTACTAAGTTAATTGTATAAGT
AATTTCACAAATGGGGAATTTTGCACAAGAGTGCTGACTGTAAGCACTGG
TAATTTCACAGTCACAAATAAGGCTTAGCTATGGAATTAAACTATTTATG
TAACATTATTTCTTTTAAGTTTAGTTCAGAGTAGATTTGCTAAGTGTTGG
TGAGGCAGAGACTGAATTAAATGACTTCCCAAGTTTGTCAGGACTTTGAG
ATTTAAAAAGTTTAAAATGCTTCTACTAAACGAAGGCCTGAATAACTTCC
ACACTTCCACATCTTCAATACTTGTCCTTGCTTTTGTTGAAGGATGTGGC
TTGCTATACTGTCAATAAGAAATTTACAACATAAGTAATTCTGTAATCAT
AATGTGAAAAATTATATATTCCATATTTCATCTTAAGATTTTATTTTATC
TTAAAATCATAAAGTAAAATGCAAATTTTCATTTGCCATATTATTTAACT
CCACAAAAGGCTTTTTTGTTAACTAATTATTTGATTTATTTACATCCCAA
ATCCTATCCCTGAGCCCCCCTCACAGAGTTCTTCGCCTGATCCCTCCTGC
CCTTCACCTCTGAGAGGGTGCTCCCCTGCCCTCATCCTCCTCACTTGGGC
ATCAAGTCTCTACAGGATCCTCTCCCATTGGGGCCAAAGAAGTCATCTGC
TACATATGTACTGGGGGGCTGTGACAGTCCCATGAATGCTCCTTGTTGGN
GGGTTAACCCCCTGGAACTCCCCATGATCCCAGTTACTGCCCCACAATTG
CGGAAATTGGTTTTATTTGGGTATTTTAATTATCAATTCCAATTTTGCCC
CCCCCCCCTGGGTTCCCCTCTGGAACCCCCACCCCATTTTCCTCTCCCCC
TGGTTTTATAAAAGGGTTTTTTCATCACCCTAAACATTTCCCCTTGGCCA
AATAATCCCCAATCTTGTGTGTCTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e04.b1 MSMg01no323_e04.b1 CHROMAT_FILE:
MSMg01no323_e04.b1 PHD_FILE: MSMg01no323_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:36 2005
         (679 letters)



>mm_chr12_51217141_51218219
          Length = 1079

 Score = 1276 bits (660), Expect = 0.0
 Identities = 672/676 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggattatgaagatttttagcatactagaatgaaagagagtaggtgccacattggcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggattatgaagatttttagcatactagaatgaaagagagtaggtgccacattggcaac 260

                                                                       
Query: 61  cttccactgtaggaccgagctgtttacttttctgaaagagtatgattaccaagatttgat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 cttccactgtaggaccgagctgtttacttttctgatagagtatgattaccaagatttgat 320

                                                                       
Query: 121 tccaatggtatttgaacctcagatatgacattagaaggatgtcttttaaaaatatggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaatggtatttgaacctcagatatgacattagaaggatgtcttttaaaaatatggttc 380

                                                                       
Query: 181 tgtcggttttcttctgattcttattcagattagagagagtaactaaattggaaaataaac 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcggttttcttttgattcttattcagattagagagagtaactaaattggaaaataaac 440

                                                                       
Query: 241 cttaaagaactgagattaaaaacagtagtgtgttcccaaaccaacatactggtcaatctt 300
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 cttagagaactgagattaaaaacagtagtgtggtcccaaaccaacatactggtcaatctt 500

                                                                       
Query: 301 tctttgtgtggaagacttgggtacataaaggtttattgattctcagataagagaatgatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttgtgtggaagacttgggtacataaaggtttattgattctcagataagagaatgatc 560

                                                                       
Query: 361 tacatatatcaataagcttcattgcctttaaattgtcctttgccataagagttttcttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacatatatcaataagcttcattgcctttaaattgtcctttgccataagagttttcttca 620

                                                                       
Query: 421 ctattttgaactatgaaacactgtgaaataaatatgacagtgtttatctttgtggtattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctattttgaactatgaaacactgtgaaataaatatgacagtgtttatctttgtggtattt 680

                                                                       
Query: 481 taatatttcactttcctaatcttctacattttcatttaaaatatttacctccctctaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatatttcactttcctaatcttctacattttcatttaaaatatttacctccctctaaga 740

                                                                       
Query: 541 tgttgtcagggctttcattttcatatctatgtatagccataatattggcagtgccagaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgttgtcagggctttcattttcatatctatgtatagccataatattggcagtgccagaaa 800

                                                                       
Query: 601 tgtggcaggatatccaaatcccaaaggtaatactacagattagcagtttccaatggaggg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtggcaggatatccaaatcccaaaggtaatactacagattagcagtttccaatggaggg 860

                           
Query: 661 gtgtgtatattatttc 676
           ||||||||||||||||
Sbjct: 861 gtgtgtatattatttc 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no323_e04.g1 MSMg01no323_e04.g1 CHROMAT_FILE:
MSMg01no323_e04.g1 PHD_FILE: MSMg01no323_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:36 2005
         (691 letters)



>mm_chr12_51392937_51394027
          Length = 1091

 Score = 1297 bits (671), Expect = 0.0
 Identities = 686/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaattatataaaatggatctatctataaatctttagaaaataatgcatgccacctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 atgaattatataaaatggatctatctataaatctttagaaaataatgcatgccacctaat 832

                                                                       
Query: 61  aatgcttgaacagatatttgtggaataagtggacataacatacataataaaaatttgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 aatgcttgaacagatatttgtggaataagtggacataacatacataataaaaatttgcat 772

                                                                       
Query: 121 tcattcttcctttcttataacacacttactaagttaattgtataagtaatttcacaaatg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcattcttcctttcttataacatacttactaagttaattgtataagtaatttcacaaatg 712

                                                                       
Query: 181 gggaattttgcacaagagtgctgactgtaagcactggtaatttcacagtcacaaataagg 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gggaattttgcacaagagtgttgactgtaagcactggtaatttcacagtcacaaataagg 652

                                                                       
Query: 241 cttagctatggaattaaactatttatgtaacattatttcttttaagtttagttcagagta 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 651 cttagctatggaattaaactatttatgtaacattatttcatttaagtttagttcagagta 592

                                                                       
Query: 301 gatttgctaagtgttggtgaggcagagactgaattaaatgacttcccaagtttgtcagga 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 591 gatttactaagtgttggtgaggcagagactgaattaaatgacttcccaagtttgttagga 532

                                                                       
Query: 361 ctttgagatttaaaaagtttaaaatgcttctactaaacgaaggcctgaataacttccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctttgagatttaaaaagtttaaaatgcttctactaaacgaaggcctgaataacttccaca 472

                                                                       
Query: 421 cttccacatcttcaatacttgtccttgcttttgttgaaggatgtggcttgctatactgtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cttccacatcttcaatacttgtccttgcttttgttgaaggatgtggcttgctatactgtc 412

                                                                       
Query: 481 aataagaaatttacaacataagtaattctgtaatcataatgtgaaaaattatatattcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aataagaaatttacaacataagtaattctgtaatcataatgtgaaaaattatatattcca 352

                                                                       
Query: 541 tatttcatcttaagattttattttatcttaaaatcataaagtaaaatgcaaattttcatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tatttcatcttaagattttattttatcttaaaatcataaagtaaaatgcaaattttcatt 292

                                                                       
Query: 601 tgccatattatttaactccacaaaaggcttttttgttaactaattatttgatttatttac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgccatattatttaactccacaaaaggcttttttgttaactaattatttgatttatttac 232

                                          
Query: 661 atcccaaatcctatccctgagcccccctcac 691
           |||||||||||||||||||||||||||||||
Sbjct: 231 atcccaaatcctatccctgagcccccctcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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