BAC Information

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BAC

Clone NameMSMg01-324C24
Chromosome12 (Build37)
Map Location 39,952,453 - 39,952,823
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324C24.T7 (MSMg01no324_c24.b1)MSMg01-324C24.TJ (MSMg01no324_c24.g1)
ACCAG442408AG442409
length718787
length of high quality
(start - end)		374 (46 - 419)134 (73 - 206)
definitionCHROMAT_FILE: MSMg01no324_c24.b1 PHD_FILE: MSMg01no324_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:26 2005CHROMAT_FILE: MSMg01no324_c24.g1 PHD_FILE: MSMg01no324_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTCAAACTGCGGGTGTGGTTCTGTTGAGCCAGTTGTATCTCTC
TAGCACAGAAATTGTGATGAAGGGGGATCTCAAGAAAGCAGATGTGATGC
AAGACTTTGGGGTTCAGTAGTAGTTGTACTTTTTTCCAGGATTAAGGATT
GAACCTTGGCCTTACATATGTTCCACCAGCTCCCTGTCACTGAGCTACAC
CCCCAGCTGAGGACAGGTTTGTCTCTGGGCTTTGATTTTTTTCAAAGGAG
GTCAATCTTCCCCAGTAGAGAATACTGCTGTAATCCATGGTCCAGATGAG
CTAATCAGAACTACTGGCAAACAGATGACTTTGGGAGGATAGGAAATTTA
TTTGAGTTGAGGGTTAGCCAGCATTATGGAAAACNCAGTATTAGAGAGGG
AGACGGGGGGGTTTTTTTCCCNNNNNNTTCCCGGCGCCCCCTTTTTTTTG
GGGAGAAAAAAATTTTTGTAAAAATCCCTCTTGGGCTTGGACTCCAATGG
TGGTGTNNTTATTGACAAGGGGGTTGGATTTGCGTAGCGAAACAAAAAAA
AAAATTTCCGNNNNNNNNNNNNNNNTNTNNTTTCTTCTTTTTCCTTTTTC
TGTGACTTTCATTTTGTCNCCCCTTTTTCCAAAGGGAGGGCCCTTATTGT
GGTGGAGAAAACTCCACG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACGAAATTAGTGGCATTATTATTATTAT
TATTATTACTATTAATGAGAGTTTTAGCATCTTGTTTTTAGTTTGTTTTT
CAAAAAATATTAATTTTCAAAATTGTTTCTACATCAATGAACAACATTCT
GGATTCCTTAAAAAAAAAAAAAAAAAGGAAGAGAANGTAAATAATTATCA
CATATTANGTAAATGGGAGATAAATTAATGTCANNCAAATGTGATTATTT
CCCCATAATAAGACAAAATATTTTGGTGGTTGGTGAAAAAATTACCGGGG
AACCTCTGAAAATTCCAAAACCCTTCCGGAAACAATGAATTTCCGGAAAT
ATTTTTCCTTAAAAATTGCTTTATGGAAAAGGGTCTAATTCAAACCTTTC
CCTCCTTTTTATTTTTATTTNNNNTTTGGNNNGAAAAGACNNNNNNNNNN
NGGGGGNCTNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGNNCTNNNN
NNNNNNNNNNNNNGNNNNTTTTTAAATAACATAATAAGGNNNNNNNNGAN
NNNCGGGGNGCCGGAAGACGGTATTAAAACTNNNNNNNNNNNGCCCCTTG
GGGGAATGAANAAAAAGGGTNNNNNNNNNGGGGNNNNNANGGTCTNNNNN
NNNNNNNNNNNNNNNNATAAACATACAATATNNNNGGGGGGTGGGGNNNN
NNNNNTTTNTNTTTTCCTCCCTTTTTTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_c24.b1 MSMg01no324_c24.b1 CHROMAT_FILE:
MSMg01no324_c24.b1 PHD_FILE: MSMg01no324_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:26 2005
         (374 letters)



>mm_chr12_39952250_39953023
          Length = 774

 Score =  611 bits (316), Expect = e-179
 Identities = 358/372 (96%), Gaps = 3/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttcaaactgcgggtgtggttctgttgagccagttgtatctctctagcacaga 64
           ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 gaattctcttcaaacagtgggtgtggttctcttgagccagttgtatctctctagcacaga 263

                                                                       
Query: 65  aattgtgatgaagggggatctcaagaaagcagatgtgatgcaagactttggggttcagta 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattgtgatgaagggggatcccaagaaagcagatgtgatgcaagactttggggttcagta 323

                                                                       
Query: 125 gtagttgtacttttttccaggattaaggattgaacc-ttggccttacatatgttccacca 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 gtagttgtacttttttccaggattaaggattgaacccttggccttacatatgttccacca 383

                                                                       
Query: 184 gctccctgtcactgagctacacccccagctgaggacaggtttgtctctgggctttgattt 243
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 gctccctgtcactgagctacacccccagctaaggacaggtttgtctctgggctttgattt 443

                                                                       
Query: 244 ttttcaaaggaggtcaatcttccccagtagagaatactgctgtaatccatggtccagatg 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttcaaaggaggtcagtcttccccagtagagaatactgctgtaatccatggtccagatg 503

                                                                       
Query: 304 agctaatcagaactactggcaa-acagatgactttgggaggataggaaatttatttgagt 362
           |||||||||||||||||||||| ||  ||||||||||||||||||| ||  |||||||||
Sbjct: 504 agctaatcagaactactggcaatacc-atgactttgggaggatagggaagctatttgagt 562

                       
Query: 363 tgagggttagcc 374
           |||| |||||||
Sbjct: 563 tgagtgttagcc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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