Query= MSMg01no325_a17.b1 MSMg01no325_a17.b1 CHROMAT_FILE:
MSMg01no325_a17.b1 PHD_FILE: MSMg01no325_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:30 2005
(695 letters)
>mm_chr12_41236704_41237798
Length = 1095
Score = 1170 bits (605), Expect = 0.0
Identities = 670/693 (96%), Gaps = 4/693 (0%)
Strand = Plus / Plus
Query: 5 gaattcaccataatatacctctatttgctcttaaaaatgtcattttgacaccatcctggc 64
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccataataaaggtctatttgctcttaaaaatgtcattttgacaccatcctggc 264
Query: 65 ctctcaccatgacacaaattcaccaaacgatagtcctgacaatgtgaagtcactgtggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 ctctcaccatgacacaaattcaccaaacgatagtcctgacaatgtgaagtcactgtgctg 324
Query: 125 ttccctttctgttcctctctggtccactccactctgttcaattccgctcccatttcattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccctttctgttcctctctggtccactccactctgttcaattccgctcccatttcattc 384
Query: 185 tatcatatgtcacgaggtttcttcaccagcctttaaaagaagcattaataattggtggct 244
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 385 tatcatatgtcacgaggtttcttcacgagcctttaaaagaagtattaataattggtggct 444
Query: 245 cacaggttgaatagcactgattaagtggacgactttctggcatacatacagtcctcttcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacaggttgaatagcactgattaagtggacgactttctggcatacatacagtcctcttcc 504
Query: 305 acgtaagccatcctaccttttgtaactgtacagccaggcagcccttgtatttatttttca 364
| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 505 atgtaagccatcctaccttttgtaactgtacggccaggcagtccttgtatttatttttca 564
Query: 365 tgtgtgtatgcacgtatgttgtgtgagtggttatatgtatgagtgcatgtgagcaagtgt 424
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 tgtgtgtatgcaggtatgctgtgtgagtggttatatgtatgagtgcatgtgagtaagtgt 624
Query: 425 atgcgtgagcatgtatgtggaggttgccagtttttcttgaatactttctaccttactcat 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 atgcgtgagcatgtatgtggaggttgccagtttttcttgagtactttctaccttactcat 684
Query: 485 taaggtagggtctctcaattgaagc--tagtgttcatcaataagtttcgtcttgccaact 542
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 685 taaggtagggtctctcaattgaagcactagt--tcatcaataagtttcgtcttgccaact 742
Query: 543 tgcttgattcgagaccacctgtcgttggaattaccgggccagccaccatgctctcttggc 602
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 743 tgcttgattcgagaccacctgtcgttggaattaccgggccagccaccatgccctcttggc 802
Query: 603 atctgtgtgggttttggggatctgatctgatctgtggttcttttgcatatgtggcaagtg 662
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 803 atctgtgtgggttttggggatctgatctgatctgtggttcttttgcttgtgtggcaagtg 862
Query: 663 gtatatgtgtgtgtgtgtgtgtgtgtgtgtgtg 695
| | ||||||||||||||||||||||||||||
Sbjct: 863 gggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_a17.g1 MSMg01no325_a17.g1 CHROMAT_FILE:
MSMg01no325_a17.g1 PHD_FILE: MSMg01no325_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:30 2005
(667 letters)
>mm_chr12_41390637_41391705
Length = 1069
Score = 1214 bits (628), Expect = 0.0
Identities = 658/668 (98%), Gaps = 2/668 (0%)
Strand = Plus / Minus
Query: 1 tagatcttctggataacttcatttactcctgttttcatgcacattttatatctttattac 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 768 tagatcttctggataacttcatttactcctgttttcatgcacattttacatctttattac 709
Query: 61 acgaaatgggatagataaaacatagtgtgatacagtatttaaaaggtaaacataattc-a 119
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 708 atgaaatgggatagataaaacatagtgtgatacagtatttaagaggtaaacataattcaa 649
Query: 120 aaaaaagacaataagaacaactacagtgacacaatgttttctaatgctttcttcttaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaaaaagacaataagaacaactacagtgacacaatgttttctaatgctttcttcttaaaa 589
Query: 180 gattaaacaaaagaatatgtcaggaacactgggaacaaagggttgatatattaaaagtag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 588 gattaaacaaaagaatatgtcaggaacactgggaacaaagggttgatatattataagtag 529
Query: 240 agaaaaaaatcattatttggcttttttatgtgctgctgtgtgctcctcgaggaagaactt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agaaaaaaatcattatttggcttttttatgtgctgctgtgtgctcctcgaggaagaactt 469
Query: 300 cactattggggaaatttagaatcacctgaattctgtatgtgagccactacaaattatgac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cactattggggaaatttagaatcacctgaattctgtatgtgagccactacaaattatgac 409
Query: 360 tataaattcttctgactaattctttccttggaaataaagaacaaatcatgtttatttatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tataaattcttctgactaattctttccttggaaataaagaacaaatcatgtttatttatt 349
Query: 420 atttataacctaccttctaataaggatatg-aaaaaagagagaatgaaagaggaatataa 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 348 atttataacctaccttctaataaggatatgaaaaaaagagagaatgaaagaggaatataa 289
Query: 479 gtaagcatccatggcagggtgcctgaagaaaagtaatgaaggaaactatgtacttcgcgc 538
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 288 gtaagcatccatggcagggtgcctgaagaaaagtaatgaaggaaattatgtacttcacgc 229
Query: 539 cagattctatcacttaatctttgcgaagatttcatttaattcccacaactgccctacggg 598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cagattctatcatttaatctttgcgaagatttcatttaattcccacaactgccctacggg 169
Query: 599 gtaggaagcactaccatccctgtctgatacatgagagagctggggcctgagatatgggcc 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 168 gtaggaagcactaccatccctgtctgatacatgagagagctggggcttgagatatgggcc 109
Query: 659 aagctgtc 666
||||||||
Sbjct: 108 aagctgtc 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space: 695763
Effective search space used: 695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
