BAC Information

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BAC

Clone NameMSMg01-325D03
Chromosome12 (Build37)
Map Location 62,573,415 - 62,573,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
Downstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325D03.T7 (MSMg01no325_d03.b1)MSMg01-325D03.TJ (MSMg01no325_d03.g1)
ACCAG443146AG443147
length669730
length of high quality
(start - end)
265 (46 - 310)648 (81 - 728)
definitionCHROMAT_FILE: MSMg01no325_d03.b1 PHD_FILE: MSMg01no325_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:40 2005CHROMAT_FILE: MSMg01no325_d03.g1 PHD_FILE: MSMg01no325_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATCAATTCCCTCTTTTCATAGCCTTCTTCACTGAACAATTTTA
AGTATTATGTAAAGCTATACTGCACAAGATAGCTTGGTACAGATGTATAT
TACAGATGTGGGATTGTCTAGAGTAACCGAAATTATAGAATGAATACATA
ATTGAATATATATTTACATGATTTATAATATAACCAGTTCAACAATGACT
GTTAACTAAAAGGCTAAATGTTTCATCTGGTCCTCAGTTATGCCATAATC
TCAAAGAAGAACTTGCTAGCCAGAGTGAGAGTAAGCAACCAAAGAGCAAG
CTTCCTTCTTCTGGGTCTTTTACATATGCAGCAGAAGTTGTANCCCAGAT
TAAAAATGGATCCTCGTACCTCATAATATCTGGATTAAAAATTTATTTTC
TAACCACACCAGACCAGGATTAGAAGTGGGTCTTCCCACTTTCAATAATT
TATTTAAGAAAAAAAAAATTCTTCACAGCTATATCAGAAGCCCTTGAGGT
AATTTAGGTTACTGCTCCGNAAAGAAAAAATAGAAAGNNCCCCCTTTATA
AATCTGTGGGGGNNNNNNNNATATTCTCACAGAAACCTCCCCCTCTTGGG
NNNNNNNNNNCCCTTTGAC
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATCAATAAAGAAAAATG
AAAGGCTATATCTGCATCTGAATTGGTCAGGTCCTGGAAGAGCCTTTCAG
GGGACAGCTATACCAGGCTCCTGTAAGCAAGTACTTCTTGGTATCAGCAA
TAGTGTCTGGGTTTGGTGTCTTCAGGTGGCATGGATCCCTTGGTGGAGCA
GTCTCCGGATGACCTTTCTTTCAGTCTTTGCTCCATTTTTAGCTCTAAAT
TTCCTTTAGATAGGAACAATTCTGGGTTAAAATTTTGAGATGGGTGGAAG
GACCCATCCCTCAACTGAGGGCCATGGCTATCTAATAGACATGGATTCTA
AAGGTTCTATCTTGTAGCCTCCCCCAGCCTGAAGTGGGCTGATACAGACC
TTGTTGCCACTGAGGTGGGCCACCTGCCATGTAGCCTTCTGACTTAGATG
GCTATATTGTTTTGTCAACTACCACTGTTCTCCAAGATCCTGCTGCCGGC
TGAGATACCTTTGAGACAATCCCCATTTGTGTGGTGGGTGTCTTCCGGTG
GGTGTCTTCCGATGGGTGTCTTCGGGCTGGATCCAGGCGTCTGGATGGAC
TAGCAGGGGGATGGGCCTACCCCCTATATGAGCTTAGACTCTAAGTAAAC
TTTAAGGAGGCTTGAACAGAATACTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_d03.b1 MSMg01no325_d03.b1 CHROMAT_FILE:
MSMg01no325_d03.b1 PHD_FILE: MSMg01no325_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:40 2005
         (265 letters)



>mm_chr12_62573211_62573875
          Length = 665

 Score =  426 bits (220), Expect = e-124
 Identities = 250/260 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatcaattccctcttttcatagccttcttcactgaacaattttaagtattatg 64
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattcactttaattccctcttttcatagccttcttcactgaacaattttaagtattatg 405

                                                                       
Query: 65  taaagctatactgcacaagatagcttggtacagatgtatattacagatgtgggattgtct 124
           |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 taaagctatactacacaagaaagcttggttcagatgtatattacagatgtgggattgtct 345

                                                                       
Query: 125 agagtaaccgaaattatagaatgaatacataattgaatatatatttacatgatttataat 184
           |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 344 agagtaacagaaattatagaatgaatacataattgaacatatatttatatgatttataat 285

                                                                       
Query: 185 ataaccagttcaacaatgactgttaactaaaaggctaaatgtttcatctggtcctcagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 284 ataaccagttcaacaatgactgttaactaaaaggctaaatgtttcatctggtcttcagtt 225

                               
Query: 245 atgccataatctcaaagaag 264
           || |||||||||||||||||
Sbjct: 224 attccataatctcaaagaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)