Query= MSMg01no325_g17.b1 MSMg01no325_g17.b1 CHROMAT_FILE:
MSMg01no325_g17.b1 PHD_FILE: MSMg01no325_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:55 2005
(681 letters)
>mm_chr12_108554975_108556055
Length = 1081
Score = 1091 bits (564), Expect = 0.0
Identities = 638/688 (92%), Gaps = 41/688 (5%)
Strand = Plus / Plus
Query: 5 gaattcacacaaggctctctcatagacagaggcctctggctgtgtgagacagacatgaag 64
|||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 235 gaattcacacaaggctct-tcataggcagaggcctctggctgtgtgagac---------- 283
Query: 65 ctctgaggacacaagtgaccagtctagacaggccacatctgtccctgcatcgtcaccctt 124
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 -------------------cagtctagacaggccacatctgtccctgcatcgtcaccctt 324
Query: 125 tggtggcattgctgtatgctgacactggcctcataaacaatcatttttgttctcctggat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtggcattgctgtatgctgacactggcctcataaacaatcatttttgttctcctggat 384
Query: 185 tagacgtagtactcagcaaatcacagttcaagccaggaaagaagatggggaaatattaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagacgtagtactcagcaaatcacagttcaagccaggaaagaagatggggaaatattaaa 444
Query: 245 agctactttttttcctcttttgaaatttttatgtgttttaagactggaagtaactgtctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctactttttttcctcttttgaaatttttatgtgttttaagactggaagtaactgtctt 504
Query: 305 aaaggcctccagggccagatccagcctacaaatagcccacgtaactgtcaacgcatgcca 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 505 aaaggcctccagggccagatccagcctacaaatagcccacgtaactgtgaacgtatgcca 564
Query: 365 gggagatactggcacctttcaacagaaatttccccatctattctccaggttcaacactcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggagatactggcacctttcaacagaaatttccccatctattctccaggttcaacactcc 624
Query: 425 caccctgtgggaaatggcatgacactgctttcaggcatggttgggggcccaatgatgcca 484
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caccccgtgggaaatggcatgacactgctttcaggcatggttgggggcccaatgatgcca 684
Query: 485 aatggcacgcattggcagaagaaatgggaaatggggtccaggaagccactagctgcattg 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 aatggcacgcattggcagaagaaatgggaaatggggtccaggaagccactagctccattg 744
Query: 545 actcctttgatgtcataaaaataatccccccctggagtctactggtaaggaaagttattc 604
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct: 745 actcctttgatgtcataaaaataatccctccctggagtctactggtaaggagagttagtc 804
Query: 605 aaatgatggattttcatagcattttaaactccagataaggaaagcagtcct--------- 655
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaatgatggattttcatagcattttaaactccagataaggaaagcagtcctagcaaagac 864
Query: 656 --ggtgtgtgtgtatgtgtgtgtgtgtg 681
||||||||||| ||||||||||||||
Sbjct: 865 ctggtgtgtgtgtgtgtgtgtgtgtgtg 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no325_g17.g1 MSMg01no325_g17.g1 CHROMAT_FILE:
MSMg01no325_g17.g1 PHD_FILE: MSMg01no325_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:55 2005
(671 letters)
>mm_chr12_108755321_108756392
Length = 1072
Score = 1245 bits (644), Expect = 0.0
Identities = 665/672 (98%), Gaps = 1/672 (0%)
Strand = Plus / Minus
Query: 1 atctgaaaggcgcttccgattttcccgtgac-caaatagacctggggaatgttcatgccc 59
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 872 atctgaaaggcgcttccgattttcccgtgacacaaatagacctggggaatgttcatgccc 813
Query: 60 ttccgttctggaatgtcaatctgggggctgttttctgacctctcagggtacagcgctgaa 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 812 ttccgttctggaatgtcaatctgggggttgttttctgacctctcagggtacagcgctgaa 753
Query: 120 ctggagaaagagttcagactcactttttcttccttcttttgactgcatcaacacgttccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ctggagaaagagttcagactcactttttcttccttcttttgactgcatcaacacgttccc 693
Query: 180 tcacctgccttggatcagaagcacaaatgaatgcatccttgttgtgaatccatagacaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tcacctgccttggatcagaagcacaaatgaatgcatccttgttgtgaatccatagacaaa 633
Query: 240 ggttgggtattgaaaatgactgagctgcggagccctagaaagggattatgctaaccctgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggttgggtattgaaaatgactgagctgcggagccctagaaagggattatgctaaccctgg 573
Query: 300 ggatttctagggacaaggagggaaaatccgagcagaagcaattatctcaggcagagtgga 359
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 572 ggatttctagggacaaggagggaaaatccgagcagaagcaattgtctcagggagagtgga 513
Query: 360 gcctacaaaggctgaggtgaccctccctgctttgagatctcaccttcatttggaggtgtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcctacaaaggctgaggtgaccctccctgctttgagatctcaccttcatttggaggtgtc 453
Query: 420 acctggactctccgaagcttcatctaagcaaatgttcctgcaataatagactctccatcc 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acctggactctccaaagcttcatctaagcaaatgttcctgcaataatagactctccatcc 393
Query: 480 ttagagggctccaactggtgctgatgtccctgcattctctaaggaccaatgctccaggcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttagagggctccaactggtgctgatgtccctgcattctctaaggaccaatgctccaggcc 333
Query: 540 tgctcacctgttactggctccgtgatgctgcgggcccattagaacccaggaaacctggtt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgctcacctgttactggctccgtgatgctgcgggcccattagaacccaggaaacctggtt 273
Query: 600 cgccctcatctgtaaatcatgtgttaactctcattagatgattggcagctctcaaagagg 659
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 272 cgccctcatctgtaaatcatctgttaactctcatgagatgattggcagctctcaaagagg 213
Query: 660 aaaatgtgctct 671
||||||||||||
Sbjct: 212 aaaatgtgctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space: 701982
Effective search space used: 701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
