BAC Information

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BAC

Clone NameMSMg01-325P02
Chromosome12 (Build37)
Map Location 80,487,031 - 80,487,588
singlet/doubletsinglet
Overlap geneRad51l1
Upstream geneGphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26
Downstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325P02.T7 (MSMg01no325_p02.b1)MSMg01-325P02.TJ (MSMg01no325_p02.g1)
ACCAG443698AG443699
length738712
length of high quality
(start - end)
558 (45 - 602)59 (247 - 305)
definitionCHROMAT_FILE: MSMg01no325_p02.b1 PHD_FILE: MSMg01no325_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:33 2005CHROMAT_FILE: MSMg01no325_p02.g1 PHD_FILE: MSMg01no325_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCAAAGTCACTCTTTACCTGAGGCATTAGTAAATTATCCTCCTC
TTCCTCCTTGTTTGTTTGTTTGCTAGGCTGGTTTTTTTTTTTTTTTACAT
CTTATTTTTGATTGATGTTTAAGTTAGCATGCAAAGCAGTGGGTATCATT
ACGGCCTTTTCAGACATGTGTATTCTCATACATTTTTCTTGTTCGCCCCC
TCCCAACACTCCTCGCTTTTACATTCAAACCCTTTCCAAATCTGGTACCA
AGCTTTCTTCTTCCTTTTTCTTCTCTTTGAATGTGGTCTTCACATTTTGT
CCTTGTTGGCCTAGATCTCACTAGCTCAAGAGATCGTCTTGCCTAAGCTT
CCTGAGCAGCTGGAACTGCAGATGTGTATCCTGGCTCTTCTATAAGGTCT
TATTTTAGCTTATAGGTTGATTAAGGTAGAATCAACCTATAATTAATTTC
AATTTCTTTCTATAGAAAAAAATTGAAAAGGTATAAGTATAGTACAATCA
AGTCTTATAAGCCATTCACACATTTTTATCTATTGTTCACAGGTTGTTGC
TGGTTTGCTCCTTAAGTTTGTTGAAATGGCCACCTAGAACTTACCTGGCC
CTATGGGTTACAAAAGGGGACCCTTTTTTTTCTCGAACCCCCTTTGGGAA
TAATTTTGCGAAAAAGGTAATAAAAACCCTTTGGCGAN
TGAAGTGGGAGCCTGGNGGCGCCTGTTTCCGACGCGAGGGGACANANAGA
AGTTAGCCGAAGGGAGAGGNGGCANNGAAACNNGGCANNNCAGNNGGAAA
AAAAANCNCCCCCAGAAAAAANCNAAANCCNNNGNGNNANGGCNCAGGGG
NNNCGGNNCGGGAACAAANACACGGGCAAGGGGACCNCCNNGGCNCACNA
AGNGAAAGGCCCCAANNGAGGAAGACAAACNNGANGACTGTATTATAAAC
AGAGTGATGTAGAACAGATATCTTCAGGGGATGGGGTGGGGGAACAGAAC
TCAGTTTTGTTTTTTTGGGCAAAANAANAGGCCCGGGACCCCNGAAANAC
ATAGCCCCCCCGCCCCCCGAAACAAGCCAGAAGCCCNCNCNGGAAGNNAC
CNGAGCGACCACGAACAAAAAACAGACCCCCNCCAAAGNGAAACGGCCGG
AAGGACCACGACAGGCCACCCCNAAANCNAGGAACCCGGAAACCAGAGGA
CCACNAAGAGCAAAAAGCACCCAAACCCGAGGAGCNCCCANCANGAAACA
CNAACANCAAAAAACCAGGCGACCCCCCCCGGCGACAAGCCCGAGCGCCC
AACGCACACCCAGCCCCACACGAAACCACCGAGCNCCCCCCCATTTTCTT
TTGTAGGGAACATGTGATGCTGATTGCCGTTGCCAGAGGTGAGCCCACTA
TTTTGTTTCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_p02.b1 MSMg01no325_p02.b1 CHROMAT_FILE:
MSMg01no325_p02.b1 PHD_FILE: MSMg01no325_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:33 2005
         (558 letters)



>mm_chr12_80486828_80487788
          Length = 961

 Score = 1040 bits (538), Expect = 0.0
 Identities = 552/558 (98%), Gaps = 3/558 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcaaagtcactctttacctgaggcattagtaaattatcctcctcttcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcaaagtcactctttacctgaggcattagtaaattatcctcctcttcctcc 263

                                                                       
Query: 64  ttgtttgtttgtttgctaggctggttttttttttttttt---acatcttatttttgattg 120
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 264 ttgtttgtttgtttgctaggctggttttttttttttttttttacatcttatttttgattg 323

                                                                       
Query: 121 atgtttaagttagcatgcaaagcagtgggtatcattacggccttttcagacatgtgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 atgtttaagttagcatgcaaagcagtgggtatcattacggccttttcagacatgtgtgtt 383

                                                                       
Query: 181 ctcatacatttttcttgttcgccccctcccaacactcctcgcttttacattcaaaccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcatacatttttcttgttcgccccctcccaacactcctcgcttttacattcaaaccctt 443

                                                                       
Query: 241 tccaaatctggtaccaagctttcttcttcctttttcttctctttgaatgtggtcttcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccaaatctggtaccaagctttcttcttcctttttcttctctttgaatgtggtcttcaca 503

                                                                       
Query: 301 ttttgtccttgttggcctagatctcactagctcaagagatcgtcttgcctaagcttcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttgtccttgttggcctagatctcactagctcaagagatcgtcttgcctaagcttcctg 563

                                                                       
Query: 361 agcagctggaactgcagatgtgtatcctggctcttctataaggtcttattttagcttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcagctggaactgcagatgtgtatcctggctcttctataaggtcttattttagcttata 623

                                                                       
Query: 421 ggttgattaaggtagaatcaacctataattaatttcaatttctttctatagaaaaaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggttgattaaggtagaatcaacctataattaatttcaatttctttctatagaaaaaaatt 683

                                                                       
Query: 481 gaaaaggtataagtatagtacaatcaagtcttataagccattcacacatttttatctatt 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaaaaagtataagtatagtacaatcaagtcttataagccattcacacatttttatctatt 743

                             
Query: 541 gttcacaggttgttgctg 558
           |||||||| |||||||||
Sbjct: 744 gttcacagtttgttgctg 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 961
Length adjustment: 10
Effective length of query: 548
Effective length of database: 951
Effective search space:   521148
Effective search space used:   521148
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)