BAC Information

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BAC

Clone NameMSMg01-326F18
Chromosome12 (Build37)
Map Location 26,892,701 - 26,893,037
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326F18.T7 (MSMg01no326_f18.b1)MSMg01-326F18.TJ (MSMg01no326_f18.g1)
ACCAG444005AG444006
length749748
length of high quality
(start - end)
683 (44 - 726)337 (77 - 413)
definitionCHROMAT_FILE: MSMg01no326_f18.b1 PHD_FILE: MSMg01no326_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:03 2005CHROMAT_FILE: MSMg01no326_f18.g1 PHD_FILE: MSMg01no326_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACGCAGTTGCATCCTTCTCAACAGTCTGTTTTACGGGAACACTTTAT
TACCACCGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTT
CTCAACAGTCTGTTTTACGGGAACCTTTATTACCGTGACCTGCAGTTCTG
GTTCCGGAATGAGGGAATCTTCCTTGCGCCGGTGATGGTAACCGTCCCGG
GTTTTCTTGTCCCGGGTTTTCTCGTCCCAGGTCTTCTCGTCCCGGGTCTC
AGCACCAACTCTTACACGCATTCACGACCGGTCAGGAAGAACGCAACAAA
CCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGA
GTGCAAGAGAGCCCCAACTCTATTGCTTACATCTTTAGGAGCCAGGGCGC
AAGAGCGCAAGAGCAAGAGCTCTATTGCTTACATCTTTAGGAGCCAGAGT
GCAAGAGCCAGAGCAAGAGAGAGAATGGCGAAACCCCGTCCCTTTTAAGG
AGAATTATTCTCCGCCTAGGACGTATTACTCCTTGATTGGCTGCAGCCCA
TCAGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGTAGTGTAAAACT
ACCCTTGGTACATGCGCAGATTATTTGTTTACCACTTATAACACAGGATG
TCAGCACCATCTTGTAACGGCGAATGTGATGGCGGCTCCCCACACTCAG
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACATAGATCCTTATATTTACAG
ACCAAGTGCTCTTCTCCAGTGATCCATCGCCCCAGAACTGTGCATTGTAC
TTTAACATCTGAGTTAATGTACCTTAGTTGTACATGTTAGCGTGGTTTAG
GATAGGACGTGTTCCCAGCATGCAGTGATCAAGTCTGGTCTCCCTTGCAC
CTCTTCCCTATCCCTTTTCCAGCCTCTGGTCTTCACTGTTCTGTTATCAG
CTCCAAGCTTTCTTTTTTAAATATCCATGCATAAGGAAAATCGTTGACTG
CTCTTCTTTGTCTGTTCATTTCCCTTAATGGAATGCCCTCCAGTGCCACT
TAAGTCACTGCAGATGGCCACCTCTCAGTTTTGTGATTTTGCTCATAAAC
TCATCTTTCCTAAGTCTTAGCCCATGTCTTTTCTCTTGTGTGGGGATCCC
ATGAGATAGGGCTGGCTGACTGGCTGACTGGTTGTCTGTTTGATTCTGTC
GAGGGTATCTCCACAGGAAAAGTGGGTTTTTAAGTACAGACCCTGTGGAC
CCATGGATTGGTCTCTGGGTAGAAATACCTAACAGAATTGTGTTCCTTTC
AGAGAAATAGACACCCTCTTTGTTTCCTCCCCTTTGGACACATTCTTCAT
TCCATTTTTATAAATTAATACCACTTGGGAGATGTGTATTCCTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_f18.g1 MSMg01no326_f18.g1 CHROMAT_FILE:
MSMg01no326_f18.g1 PHD_FILE: MSMg01no326_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:04 2005
         (337 letters)



>mm_chr12_26892684_26893420
          Length = 737

 Score =  652 bits (337), Expect = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacatagatccttatatttacagaccaagtgctcttctccagtgatccatcgccccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaacatagatccttatatttacagaccaagtgctcttctccagtgatccatcgccccaga 295

                                                                       
Query: 61  actgtgcattgtactttaacatctgagttaatgtaccttagttgtacatgttagcgtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgtgcattgtactttaacatctgagttaatgtaccttagttgtacatgttagcgtggt 235

                                                                       
Query: 121 ttaggataggacgtgttcccagcatgcagtgatcaagtctggtctcccttgcacctcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttaggataggacgtgttcccagcatgcagtgatcaagtctggtctcccttgcacctcttc 175

                                                                       
Query: 181 cctatcccttttccagcctctggtcttcactgttctgttatcagctccaagctttctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cctatcccttttccagcctctggtcttcactgttctgttatcagctccaagctttctttt 115

                                                                       
Query: 241 ttaaatatccatgcataaggaaaatcgttgactgctcttctttgtctgttcatttccctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ttaaatatccatgcataaggaaaatcgttgactgctcttctttgtctgttcatttccctt 55

                                                
Query: 301 aatggaatgccctccagtgccacttaagtcactgcag 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 54  aatggaatgccctccagtgccacttaagtcactgcag 18


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)