BAC Information

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BAC

Clone NameMSMg01-326G20
Chromosome12 (Build37)
Map Location 67,232,005 - 67,232,635
singlet/doubletsinglet
Overlap genenone
Upstream geneFancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326G20.T7 (MSMg01no326_g20.b1)MSMg01-326G20.TJ (MSMg01no326_g20.g1)
ACCAG444055AG444056
length767715
length of high quality
(start - end)
---632 (80 - 711)
definitionCHROMAT_FILE: MSMg01no326_g20.b1 PHD_FILE: MSMg01no326_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:08 2005CHROMAT_FILE: MSMg01no326_g20.g1 PHD_FILE: MSMg01no326_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGGGGGGGGGGGNNGGGGGNNNGCCCCCCNNCCCCCCNCCAGAANNNNN
CATCAATAATTGCGGCGCNAAAAGAAGCCCTTTCCTACCCGCCNGNGGAA
NNNCNNATTCCAAAAAACGGGGGNNGAGAAGANNNGAAAAAAAGGGNAGN
ANNNNNAANNANNAGGGAAAGGNAAANNAAAANAGNNNGGAGNNNNNANN
ANANANNAGNNAGAAGGGNNAAGAAAAAAAANNNAGGNGGAAGNAGAAGG
GGGGGAGGAGGNGGAGAAAGAGGAANANNNNNNNANGGNNGGNGTTTTTG
NAAGNTTGTANAANAAATATGGAAATNAGTNTGGNGGTTATGGAGAAAAT
TGGANATATTTTTTTTTTTTTGANNNNGNAANANNNNNNNNGGGNANANA
NNNAGAATATANNCCAACCGGCACGAAAGACACAGGCNCCACAAGGNNCA
GAGAAGCCNAACCCACAAAAGCCAGAAGCCGGAAAGAANCCAGAAGCCCC
NCAACAGAGGAAGGGCNACAGAAAAGGNGANACANCNACACAAGGGAGNA
CCACACAGCAACNAAAAAGAACGAANNNANGAAACNCCCAGGCAAACGGA
NGGACCCGGAGGGCACCACCCCGAGGGAGGNAACGCCACCACAAAAGAAC
ACAAACGACAAGAACCCACCGAAAAGCGGACANGAGCCCAGAAACCCTTT
TTTTTTTTTGAAACAGAAACAAAGCACAGGAGACTCAAGAAGAACGAAGA
TCAAAGTGGAAAATTTG
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGCCTCCTTCCCATGAGA
CTATAAATGCTCCTGAGTTAACTGTCTAAAATTTAAACTAATCACCACTA
GATGGTAGCCTTGTCAGGCATCATTGATTCATATAACCAATTCCTAGGGC
TATAGTGATGAGAGGTATATGGACTATACTCACAACAATTTTAGGTACAG
AGAAGTTATTAATTGCAGTAATTTATTTTTGAATTAATAAGTACTAATAA
CTTACTGAATATAAATTATGATAGCGATCTAAACTTAGTTTAATAGTCAT
AAAATGCTTTGATTTTGTATTTTTAATTAACTTTGATGTTTTGGTACTTA
GTTGATCACATAGCAACACGCCTAATTTTATATATCATGAAAATTGCTTT
AGACTTATTCCATATTTTATCATAAGGAAACTATTCACCTTATTCAAGTT
TCTACTCAATTTTTGTTATTTTTTTTATTTCAAAATTTTCTATCAATTTG
TCTTAAGATTTTGTTTTAATTTTTTAATAACATGTATTTGTTTGGGGACA
TTGTGCTTGTAAGTAGAAGCAAGAATGTTGGATCCTCTGGAACTGAAGTT
ACTGGTGTTTGTAAGCCTTCTGATATAAGTGCTGAGAACTGAAATAGGGT
CCTTTTCAAGAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_g20.g1 MSMg01no326_g20.g1 CHROMAT_FILE:
MSMg01no326_g20.g1 PHD_FILE: MSMg01no326_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:08 2005
         (632 letters)



>mm_chr12_67231805_67232835
          Length = 1031

 Score = 1176 bits (608), Expect = 0.0
 Identities = 626/632 (99%), Gaps = 1/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagcctccttcccatgagactataaatgctcctgagttaactgtctaaaatttaaact 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ctcagcctccttcccatgagactataaatggtcctgagttaactgtctaaaatttaaact 260

                                                                       
Query: 61  aatcaccactagatggtagccttgtcaggcatcattgattcatataaccaattcctaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaccactagatggtagccttgtcaggcatcattgattcatataaccaattcctaggg 320

                                                                       
Query: 121 ctatagtgatgagaggtatatggactatactcacaacaattttaggtacagagaagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ctatagtgatgagaggtatatggactatactcacaacaattttaggtacagagaagttag 380

                                                                       
Query: 181 taattgcagtaatttatttttgaattaataagtactaataacttactgaatataaattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattgcagtaatttatttttgaattaataagtactaataacttactgaatataaattat 440

                                                                       
Query: 241 gatagcgatctaaacttagtttaatagtcataaaatgctttgattttgtatttttaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatagcgatctaaacttagtttaatagtcataaaatgctttgattttgtatttttaatta 500

                                                                       
Query: 301 actttgatgttttggtacttagttgatcacatagcaacacgcctaattttatatatcatg 360
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 501 actttgatgttttggtacttagttgatcacatagcaacatgcttaattttatatatcatg 560

                                                                       
Query: 361 aaaattgctttagacttattccatattttatcataaggaaactattcaccttattcaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaattgctttagacttattccatattttatcataaggaaactattcaccttattcaagt 620

                                                                       
Query: 421 ttctactcaatttttgttattttttttatttcaaaattttctatcaatttgtcttaagat 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 ttctactcaatttttgttattttttt-atttcaaaattttctatcaatttgtcttaagat 679

                                                                       
Query: 481 tttgttttaattttttaataacatgtatttgtttggggacattgtgcttgtaagtagaag 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttgttttaattttttaataatatgtatttgtttggggacattgtgcttgtaagtagaag 739

                                                                       
Query: 541 caagaatgttggatcctctggaactgaagttactggtgtttgtaagccttctgatataag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caagaatgttggatcctctggaactgaagttactggtgtttgtaagccttctgatataag 799

                                           
Query: 601 tgctgagaactgaaatagggtccttttcaaga 632
           ||||||||||||||||||||||||||||||||
Sbjct: 800 tgctgagaactgaaatagggtccttttcaaga 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1031
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1021
Effective search space:   635062
Effective search space used:   635062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)