BAC Information

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BAC

Clone NameMSMg01-326K22
Chromosome12 (Build37)
Map Location 40,220,516 - 40,220,811
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326K22.T7 (MSMg01no326_k22.b1)MSMg01-326K22.TJ (MSMg01no326_k22.g1)
ACCAG444241AG444242
length730726
length of high quality
(start - end)
---296 (67 - 362)
definitionCHROMAT_FILE: MSMg01no326_k22.b1 PHD_FILE: MSMg01no326_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:25 2005CHROMAT_FILE: MSMg01no326_k22.g1 PHD_FILE: MSMg01no326_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CCATGAAGTGGGAGGCCTGGCGGCGCCTGGTTTCATATTGAGGTGAACTA
TAGAAGGTTTCAGAAATCTCTTTTGACTATTTGAAGGTGTCAAATTCATA
CATTAACAGAGAAAAAAACCTGACATGCATCCATGACATAGAGTGGGATG
AGAAGAGAAAATTAACTGTTTTTAAAGATATGACTCGAATGCATATACTA
AATTAGCAATGGGAAGATAGAACCATGATGGGGACCTGCCAGTAGATGGG
GAACTTGCTTTGAAAATGACCTGTCAAGAGGGAAACTAGAGCCAACTAAA
CTTTGCTGCCTAGGCTTATATTTGCTAACTTGGGCTATATATTAGGCCAC
TCAGTTTTAGTGGTCAGCGTCGTTCACGTCATGATAGGACATAATTTCTA
CAATAACTAAACGCCACATTAATACTCATAAACGAGCCTTACTCTATTTA
TACCTAAAATCCATCAAGTTGTCTGCATTAGAGGAAGGAGCTGATCCAAG
GAGATAAAGCCCATTTGTTATATTGGAATATCTGATTGGTGGGAAATTAA
CACAGTGCCCAGAATGAGAAGGGTGGGATCGAACTCTTGTAGGCCCGTGC
TATTTTAATGCCAGTTGTGAAGGAAAGCACTGTTCAAAGTATTTTAAATG
GCACTGATATAACATTCCCTACCCTTCCTGGATGAAGTTTTACCAATTTT
TGACCTGTTCTGGTATATTACAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_k22.g1 MSMg01no326_k22.g1 CHROMAT_FILE:
MSMg01no326_k22.g1 PHD_FILE: MSMg01no326_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:25 2005
         (296 letters)



>mm_chr12_40220316_40221011
          Length = 696

 Score =  505 bits (261), Expect = e-147
 Identities = 288/297 (96%), Gaps = 2/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttttgactatttgaaggtgtcaaattcatacattaacagagaaaa-aaacctgaca 59
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 496 tctcttttgactatttgaaggtgtcaaattcatacattaacagagaaaataaacctgaca 437

                                                                       
Query: 60  tgcatccatgacatagagtgggatgagaagagaaaattaactgtttttaaagatatgact 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436 tgcatccatgacatagagtgggatgagaagagaaaattaactgtttttaaagatattact 377

                                                                       
Query: 120 cgaatgcatatactaaattagcaatgggaagatagaaccatgatggggacctgccagtag 179
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cgaatgcatatagtaaattagcaatgggaagatagaaccatgatggggacctgccagtag 317

                                                                       
Query: 180 atggggaacttgctttgaaaatgacctgtcaagagggaaactagagccaactaaactttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atggggaacttgctttgaaaatgacctgtcaagagggaaactagagccaactaaactttg 257

                                                                    
Query: 240 ctgcctaggcttatatttgctaacttgggctatatattaggccactcagttttagtg 296
           ||||||||||  | ||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct: 256 ctgcctaggc-aaaatttgctaatttgggttatatattaggccactctgttttagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)