Query= MSMg01no326_n04.b1 MSMg01no326_n04.b1 CHROMAT_FILE:
MSMg01no326_n04.b1 PHD_FILE: MSMg01no326_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:35 2005
(698 letters)
>mm_chr12_96694586_96695677
Length = 1092
Score = 1199 bits (620), Expect = 0.0
Identities = 674/694 (97%), Gaps = 6/694 (0%)
Strand = Plus / Plus
Query: 5 gaattctcattgatgcttataggataaatatggaatttagaaaaaaatctgtacctcatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattgatgcttataggataaatatggaatttagaaaaaaatctgtacctcatt 264
Query: 65 tccatttatgctctcaccaaaaacattcctcttagttcaaatacagttcctgatttgcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccatttatgctctcaccaaaaacattcctcttagttcaaatacagttcctgatttgcag 324
Query: 125 tctaagggtgggcatggagtcattgagcagtatgagcattccaggccctgagtcttgaaa 184
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tctaaaggtgggcatggagtcattgagcagtatgagcattccaggccctgagtcttaaaa 384
Query: 185 taaagtgcgtgttctcagcaagtttgtggtttatatggaattgaagcactaaatgagggt 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 taaagtgcgtgttctcagcaagtttgtggtttatatggaattgaagcacgaaatgagggt 444
Query: 245 cgaggattttttttaacataatatatgtcttttatattcaatataaagtaatgcaatcta 304
| |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 ctagga-ttttttaaatataatatatgtcttttatattcgatataaagtaatgcaatcta 503
Query: 305 tttgcaatgtcacagtttgtacagttacagaaatgactgtaaatttttttttactttgaa 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 tttgcaatgtcacagtttgtacagttacagaaatgactgtaaa---ttttttactttgaa 560
Query: 365 gggatcaacaccctaacccgacattattattgactattgttaatataatctgaacgccca 424
||||| || | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 gggattaagaacctaacccgacattattactgactattgttaatataatctgaacgccca 620
Query: 425 atgcgtgtgagtctctgcatgcgtgaagttgaggcgtgagtgcttcctgtttataatgtt 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcgtgcgagtctctgcatgcgtgaagttgaggcgtgagtgcttcctgtttataatgtt 680
Query: 485 atgctgcaagggctattattagtactcacatcgatacacagcttcctcaatgagacctca 544
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgctgcaagggccattattagtactcacatcgatacacagcttcctcaatgagacctca 740
Query: 545 attcttaaggacctacattcagaaaccaaacattaaatggcaaatgtgggcacattaaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attcttaaggacctacattcagaaaccaaacattaaatggcaaatgtgggcacattaaaa 800
Query: 605 acatgtatatagagtcctcacttgtaaagactcctgtgaacactgctgccctctcgattc 664
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acatgtatatag--tccacacttgtaaagactcctgtgaacactgctgccctctcgattc 858
Query: 665 aataattaaagcaggcatccagaattacttaacc 698
||||||||||||||||||||||||||||||||||
Sbjct: 859 aataattaaagcaggcatccagaattacttaacc 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1092
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1082
Effective search space: 744416
Effective search space used: 744416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_n04.g1 MSMg01no326_n04.g1 CHROMAT_FILE:
MSMg01no326_n04.g1 PHD_FILE: MSMg01no326_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:35 2005
(653 letters)
>mm_chr12_96874366_96875418
Length = 1053
Score = 1243 bits (643), Expect = 0.0
Identities = 649/651 (99%)
Strand = Plus / Minus
Query: 1 tctaaggattgaaacttgaaatgcatgtgtgcctgtttctgggccagttgagaaatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tctaaggattgaaacttgaaatgcatgtgtgcctgtttctgggccagttgagaaatgaaa 792
Query: 61 acattcttaattatttcaagcccatatagtggtgtagagggtaattaactgtgatatgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 acattcttaattatttcaagcccatatagtggtgtagagggtaattaactgtgatatgca 732
Query: 121 ttttacacccaattagagggtatcttagcaccaagataattggagccagcagcacctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttttacacccaattagagggtatcttagcaccaagataattggagccagcagcacctagg 672
Query: 181 aagtgcaatcaaacaagtttatcatcacatcttattgtcctctgatcccatgaactttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aagtgcaatcaaacaagtttatcatcacatcttattgtcctctgatcccatgaactttta 612
Query: 241 caatccccaagggatggctgaatgggaaaatgttgctcattattgaaactttattaaggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caatccccaagggatggctgaatgggaaaatgttgctcattattgaaactttattaaggc 552
Query: 301 ctaaagccagatcaaggatttcctgtttgtttaaaatcccctaaccttcactatggcttc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 551 ctaaagccagatcaaggatttcctgtttgtttaaaattccctaaccttcactatggcttc 492
Query: 361 atggtcttttgctcttttttaactaatggtttctttactattttgctaatgatttcttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atggtcttttgctcttttttaactaatggtttctttactattttgctaatgatttcttca 432
Query: 421 ctgcttttcagtactatatccatccatttgttttggtagacagtaagttgtgaaattttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctgcttttcagtactatatccatccatttgttttggtagacagtaagttgtgaaattttc 372
Query: 481 ttggcaattgagacagtctgttagcattgttttcttttcttgttaccagagaatgcagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttggcaattgagacagtctgttagcattgttttcttttcttgttaccagagaatgcagtg 312
Query: 541 cagaacatggggactaatctgtggtgctgagatttttcagacactaccatgtagaggttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cagaacatggggactaatctgtggtgctgagatttttcagacactaccatgtagaggttc 252
Query: 601 taagaactcaactcgagatgtgagcctatgagtgtgttccatagctctata 651
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 251 taagaactcaactcgagatgtgagcctatgagtgtgttccatagccctata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
