BAC Information

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BAC

Clone NameMSMg01-327D01
Chromosome12 (Build37)
Map Location 97,962,250 - 97,962,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277, LOC382626, LOC100039743, LOC667732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327D01.T7 (MSMg01no327_d01.b1)MSMg01-327D01.TJ (MSMg01no327_d01.g1)
ACCAG444613AG444614
length800730
length of high quality
(start - end)
286 (48 - 333)450 (76 - 525)
definitionCHROMAT_FILE: MSMg01no327_d01.b1 PHD_FILE: MSMg01no327_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:03 2005CHROMAT_FILE: MSMg01no327_d01.g1 PHD_FILE: MSMg01no327_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGAGATACGCGGA
ATTCAAGATCCAATTGTCAACCAAACACCTACAGACACTTAATTTTTTAC
AAAGAAGCTCAAAAACCTTTTACTCTAAAAAAATAAAACATCTTTAAAAA
TGTTGCTGGTCTAACTGGATATTTGCATATAGAAGAATATGAATAGATCC
TTATCTATTACCCTGTACAAAACTCAAGTCCGAGTGGATCAAAGACCTCA
ATATAAAACTGGGTAGACTAAATCTGCTAGAAGAGAACTTAGATAGTTAG
CATGGACACAGGCAGGAGACAATTTACTGAACAGACATCNCCCCCCTCTT
CCCCTTCTCCCCCCCCTCTTTTTTTTCTCTTGTTCTTACCCCCTTTTCCC
TCTTCCACTCATATTATTCTAGCCTTTCTATCCACTTTTATACTTTTCCT
TTCCCATTCCCAGTCTCTTCCTTTTTTATTTATCCGTTTTTCTTCTTCCC
CCTTTTTTCCTTTCATCTCCCTTTTTATCCTCCGTTTACCCCCCTCCTCT
CATCTTTCCACCTTTTTTTACCCTCTTTTTTTTTATTTTTGTTTTTACCT
CCTATCTACCTATCTATTCTTCATATTTTCTATTTCAACACGCTCTAGCT
CCTCCTTATATTACACGATCTCATCCTTCTCCCCCGATCTTCCTCTTTTA
GCCATTTTCCTTATTTATCACCCTCCCTATACTTCTTTTATTAATTTCTC
TTTCCCACTGCTTCCTCCCCTCTTTATCTCCCATATACTATTTCCTTTTG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGTGCCTAAGTGTAATCAAAGATT
ACAAGCAGAGCTTAGTAACACTAGGGATATTCCCAAGAGAGAAAATAGTT
CAGACTCTGTACTCTGAGAACCTGGCGAGTAGTCACATGTCCATTAGGAA
TCTATTGCTCACATGAAGCAAGAGTGTATACAAATAGCCACAGGTGAGCA
TTCCCATTGTAAGCACAGGAGGAATCTTGGAATTCAGACCAGGGTACCCT
GAAGGGAGCTATGTTAGTTATTCATAGCTGCAAATCAAAGTATCTCAAAA
CTTATTTTCATCAATCATTTTTTTTTGTAATTACACAAATTTTATTATTT
ACTATCCTAGGAATCGGTCCCCTAAAACTTTTGCTTAGGACCTAGAACAT
TTGGTGTCAAATGTCATCATGCTCTCCTGAAACTATGAGTGATGGCTGGA
GCTGTTGGTCAGAGATTTATTATTTAGGATGCAGATTCCTCAATTCTTGT
TTTGCTTTTTGTTTTCTTTTTTTGCTTTGCTTTGTTTTTTTCTTACGTGA
ACTAACTCCCAGATCCTTGCAAAATTCCAATAACTACTTAATCTAACCAC
AGTATTTTTTTTTATCTTTTTTAGCGCCGCAAGTTCATGACTTTTTACCC
ATCTACTAACTTTTCGTACCTCCTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_d01.g1 MSMg01no327_d01.g1 CHROMAT_FILE:
MSMg01no327_d01.g1 PHD_FILE: MSMg01no327_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:03 2005
         (450 letters)



>mm_chr12_97962050_97962898
          Length = 849

 Score =  762 bits (394), Expect = 0.0
 Identities = 436/450 (96%), Gaps = 1/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgcctaagtgtaatcaaagattacaagcagagcttagtaacactagggatattccca 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 649 tggtgcctaagtgtaatcaaagattataagcagagcttagtaacactagggatattccca 590

                                                                       
Query: 61  agagagaaaatagttcagactctgtactctgagaacctggcgagtagtcacatgtccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agagagaaaatagttcagactctgtactctgagaacctggcgagtagtcacatgtccatt 530

                                                                       
Query: 121 aggaatctattgctcacatgaagcaagagtgtatacaaatagccacaggtgagcattccc 180
           |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||
Sbjct: 529 aggaatctattgctcacatgaagcaagagtatatacaaatagccacagatgagcctcccc 470

                                                                       
Query: 181 attgtaagcacaggaggaatcttggaattcagaccagggtaccctgaagggagctatgtt 240
           | ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 469 actgtaagcacaggaggaatcttggaattcagaccagggtacagtgaagggagctatgtt 410

                                                                       
Query: 241 agttattcatagctgcaaatcaaagtatctcaaaacttattttcatcaatcatttttttt 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 409 agttattcatagctgcaaatcaaagtgtctcaaaacttattttcatcaatcatttttttt 350

                                                                       
Query: 301 tgtaattacacaaattttattatttactatcctaggaatcggtcccctaaaacttttgct 360
           ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||
Sbjct: 349 tgtaattacacaaattttattatttactatcctaggaatccatcccctaaaatttttgct 290

                                                                       
Query: 361 taggacctagaacatttggtgtcaaatgtcatcatgctctcctgaaactatgagtgatgg 420
           | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgggacctagaa-atttggtgtcaaatgtcatcatgctctcctgaaactatgagtgatgg 231

                                         
Query: 421 ctggagctgttggtcagagatttattattt 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 ctggagctgttggtcagagatttattattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 849
Length adjustment: 10
Effective length of query: 440
Effective length of database: 839
Effective search space:   369160
Effective search space used:   369160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)