BAC Information

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BAC

Clone NameMSMg01-327J08
Chromosome12 (Build37)
Map Location 14,715,843 - 14,716,139
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238091, EG633789, LOC668481, AW125753, LOC100043256
Downstream geneMap1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327J08.T7 (MSMg01no327_j08.b1)MSMg01-327J08.TJ (MSMg01no327_j08.g1)
ACCAG444905AG444906
length807775
length of high quality
(start - end)
267 (43 - 309)297 (72 - 368)
definitionCHROMAT_FILE: MSMg01no327_j08.b1 PHD_FILE: MSMg01no327_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:31 2005CHROMAT_FILE: MSMg01no327_j08.g1 PHD_FILE: MSMg01no327_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAA
TTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCA
GGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGGGC
GTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATT
CTTAAGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAG
TTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCA
GCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGATCAG
ACTCTGTAGGCATGCTCTCCTCTCTCAGGGAAGGTGTACTGTTATCTGTT
GTTTGGACCTTCTTCTGCCCCCCCGTTTTTGNCCTTATAAGGATCTTTCT
CATAATCTGTGTTGCCTTTGCTCTGTAATGTGGCCCCGCTTGACTTGGTC
TTCTTTTGTTTTCCGTCTCTTATTTTCCGTGTTTTTTTGTTCGCGTCGTA
TTCTTTCTTTCTTTTCTTTTTTGTCCGTTTTTTGCTCTTTTATTTTTTGT
TTTTTTTCTGCCTTTTATTCTCTCCGTTTTATCCCGTATTCTTTGGTACT
GTTCTCTCTTTTCTTTATTCCTCTACCACATATTCTTTATTTATTTTTCT
CTATTTTCTCTTGTTCCCTTTTGCATCCTTTCTTTTTCTTCATTTATCGT
TCTCGCTCCTCTTACCTTTCTCTCTTTCTCCCTCGTCTTCCTTTCTTTCT
TCTTCTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCATAATTTTGTGGTTCATATACTCCAC
AGATATATAAGTGCAATAATGCAAGATGATTGTGTGCTTGTGTGTGTATA
CACATATGTGTGTTTGAATTCCATGGTAATATATACTGTTTCAATAAATA
TTACCTATTAAGTGTTGTGTAGATTGGTTCAAATTCTTGCAACTGTGAAG
GAAAGTCCAGTCTTAGGTATCATGAATGAATGAAAACTCAGAAAATTCTT
GAACTGAAAACATATTGTTTTTGCATTCTTTACATTTGGATTTCCGGAGA
AGTACAAATAAAACCTTCAACAACTTCCAAAATAACATAAAATTAAAATA
TAAATATACTTCTTTTAGGACCCCCCCCTCCCCAAACTGGTTTACACAGA
CCTCAATAAAGGATAGCATTAATTCAAATATTCACTGTTCAGTGTTCACT
TATAATTGAACTTTGTGCTTGAATAATGCCTTGTGATCTTACTATGAATT
ATTTTGCATTACACTGTTATTATCTATATCTTGAAACTTTTATATATAAT
CACTGTTATATTTCTTATTTATCCCTTGTCTCTTTATAATGTCCTTCATA
TTTTTGTTTTCATCCATTCCATACTCTTGTCCTATATAAATATTTTACTT
TTAATTACAACGATTTATAACTATCCTCTTGATCATCGTCATATTATTTA
CTTCTTAATTCTTCTTTCTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_j08.g1 MSMg01no327_j08.g1 CHROMAT_FILE:
MSMg01no327_j08.g1 PHD_FILE: MSMg01no327_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:31 2005
         (297 letters)



>mm_chr12_14715643_14716339
          Length = 697

 Score =  543 bits (281), Expect = e-159
 Identities = 293/297 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcataattttgtggttcatatactccacagatatataagtgcaataatgcaagatgatt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcataattttgtggttcgtatactccacagatatataagtgcaataatgcaagatgatt 260

                                                                       
Query: 61  gtgtgcttgtgtgtgtatacacatatgtgtgtttgaattccatggtaatatatactgttt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtggttgtgtgtgtatacacatatgtgtgtttgaattccatggtaatatatactgttt 320

                                                                       
Query: 121 caataaatattacctattaagtgttgtgtagattggttcaaattcttgcaactgtgaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caataaatattacctattaagtgttgtgtagattggttcaaattcttgcaactgtgaagg 380

                                                                       
Query: 181 aaagtccagtcttaggtatcatgaatgaatgaaaactcagaaaattcttgaactgaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtccagtcttaggtatcatgaatgaatgaaaactcagaaaattcttgaactgaaaac 440

                                                                    
Query: 241 atattgtttttgcattctttacatttggatttccggagaagtacaaataaaaccttc 297
           ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 atattgtttttgcatcctttagatttggatttccggagaagtacaaataaaaccttc 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)