BAC Information

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BAC

Clone NameMSMg01-327J10
Chromosome12 (Build37)
Map Location 57,105,414 - 57,105,661
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
Downstream geneLOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327J10.T7 (MSMg01no327_j10.b1)MSMg01-327J10.TJ (MSMg01no327_j10.g1)
ACCAG444909AG444910
length785809
length of high quality
(start - end)
248 (75 - 322)216 (73 - 288)
definitionCHROMAT_FILE: MSMg01no327_j10.b1 PHD_FILE: MSMg01no327_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:31 2005CHROMAT_FILE: MSMg01no327_j10.g1 PHD_FILE: MSMg01no327_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCACACCGCGGA
ATTCATGGTCCTGTATCCGTGATTGTGGGGCTAGTGTGTGAGCTGTATAA
ACACTCTTGATTACCGTCCCTCTGTAACGGCTGATTTTTTGATTGCTTAA
TAAGGCCATCTATTCTGCATCAGGGCCTGGCAAAGCAGTTGGTGAAATCA
GTTAGGGTCACTTTTTTTCTGGTCCGAGTATCAGGAGGAGTCTGTGATGG
TAGCAGTTGACTCAAAACATAATTACAGGCTATTTAATCGCATCTGTTTC
CCCACTTAACATTGTTTGTTCAAGTTATTCTTAGTTAAGTATATCTAAAG
GACAATAACGGTATTAATGCTAACAAACTACTGCTACATGTGTAAAACTC
TAGGGTTTGTTATAATTACACACAACTCTTTTTCGCAGAGATTTTTTAAG
GTACTAATTTTTATTATTTTCTATATTCACTTTTGCTTACTTGGACCGTC
GTCAATTCTCTTTGGCCGATTTATATCCTTTACTATTTCGTCCTCTCTTC
TTTTATTCTTTCTTCTTTTGTCCTATATTTCTTTTCCTCCTCCTCTTTCT
CCTCTCTTTTTCCTCCCCTTTTATTCTCTTGTCCCTATCCTCCTTCTCTC
TATTCTTTAACCTCTCCCCCTCTTCGCATTTTTCCCTTTCTTTTCCTTTA
TCCCGATTTCACCACTATCTTTTCTTTCTTCTCATTCTCACTCGTATCCC
TCTCCTCTCCCCTAGATCCTCATACTATTTCGTAC
CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGGTAGTTGTGACAGTGTGCACAAGAC
CTGGGCAGACTCAATCCAGACAAAAATCCCAGTATGGAGGGGTAGAGGTG
GGCATGAAGTTCCACCACTAAGCAGAGGAGCTATGGACATTTGTTAGCAA
GACCCTGGTAGGCACCCACGCATCAGGGCAGGGACTTAGGGGTGGATCTG
GACAAGTTAGGGAGCGGAAGTGAGCACGTTCAAATACATTGTATAGCATT
TTCACAGAACTAATATAAATACTTTTTTTTTTCATAATAACCTGTTGTAA
GTTACCACTTGATTATGTTGCCTCATACTCAACTCGAATGTAACAGAGTT
AGGAATGGTAGTAAAGGATCCCGCACCCCCCACACAGTATATTTAGTAAA
GTATCGGGCCATTGCCCATTCTTTGAGTAACTTACTCTGTCTATATTTTT
CGTCTAATCACTATTTTCACGTATAATTCCTTTCTTTTCTTCTCTTTTTC
CCTCTTTTTTCTTTTCTCTTTTTCCCTCTTCGCTTTGACTCACTTTTTCT
TTTTTCCCCTCTTTTTTTTATCTCCTCCCCTTTATTTCTCCCTTCATTTT
TCTCGGTGTATCTTCCCTCTTATTTCTTTATATCCCTCTTTTCCACTTCC
TACCCTTATTTTCTTTATTTCCTTCATGTTTTTTACATCTTTATTTTCTT
CTTTTGCCATACTCCACTTTCCTTATATTCTTTGCTGCTCATTCTTACCT
TATCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_j10.b1 MSMg01no327_j10.b1 CHROMAT_FILE:
MSMg01no327_j10.b1 PHD_FILE: MSMg01no327_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:31 2005
         (248 letters)



>mm_chr12_57105214_57105861
          Length = 648

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggggctagtgtgtgagctgtataaacactcttgattaccgtccctctgtaacggctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtggggctagtgtgtgagctgtataaacactcttgattaccgtccctctgtaacggctga 389

                                                                       
Query: 61  ttttttgattgcttaataaggccatctattctgcatcagggcctggcaaagcagttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttttttgattgcttaataaggccatctattctgcatcagggcctggcaaagcagttggtg 329

                                                                       
Query: 121 aaatcagttagggtcactttttttctggtccgagtatcaggaggagtctgtgatggtagc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 328 aaatcagttagggtcactttttttctggtccgagtagcaggaggagtctgtgatggtagc 269

                                                                       
Query: 181 agttgactcaaaacataattacaggctatttaatcgcatctgtttccccacttaacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agttgactcaaaacataattacaggctatttaatcgcatctgtttccccacttaacattg 209

                   
Query: 241 tttgttca 248
           ||||||||
Sbjct: 208 tttgttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)