BAC Information

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BAC

Clone NameMSMg01-327K16
Chromosome12 (Build37)
Map Location 76,509,958 - 76,510,203
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnh5, Rhoj
Downstream geneGphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327K16.T7 (MSMg01no327_k16.b1)MSMg01-327K16.TJ (MSMg01no327_k16.g1)
ACCAG444966AG444967
length733769
length of high quality
(start - end)
246 (71 - 316)86 (71 - 156)
definitionCHROMAT_FILE: MSMg01no327_k16.b1 PHD_FILE: MSMg01no327_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:37 2005CHROMAT_FILE: MSMg01no327_k16.g1 PHD_FILE: MSMg01no327_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAAT
TCATAAATGTTGCCATGACTAAATAGTAACAATATTTGCACCCTCATTTC
CAAAACAGTGTGTTGTACACCATCAAAGTTTAAATAAGTATTTATGGAAA
AGAAGGCAGTGGAATGGAGAGAAGGGAAAGACACTATTATAAATCCTAGC
AGATATTTTCCTCCTTTTCCTTGGTAACTTTCCTGACTGTAATATATATT
TGTTGCAGTTTTTAATCCCATGGGCTAGCATCTCCACTGTCTTTTGGGCG
GNACCACACACTCTGCTTTNCTCATTCATCATTGTTGTCCTGCTGTCTGC
CATGGGAGTAATGTTCTCTCTGCCTCTGATATGTCACCATCTGGTCCCTG
AATAGCTCTGTTTTCTCCCACCCCCCCACAAGCCCAATTCCATGCCCGCA
TCCCCTGGCCTAATAGGCAAGTCACAGCGAACTTCCCTGTGTTGGTCGTG
ACCTCTCCTGCTTTAGCCCTCGCTTCCTGTACCCCTTTGCGTTTTCCTCG
CCTCTTGTCCTTACCTCCATTCCTGGCACGTTCCCTGTTCCTCCTTTTAA
CCCCGCCTCTACTTTGCTTGCTCCCCCCTACCTTCGCCGTACTTCCATTT
TTTTTTTTCTTCTCCCCCTCACTTTTCTTTTCCTTTTCGTTCCCCTTTTT
ATCTTGTTTCCCCTCCCTCTTTCTTTATTCTCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCCAAAAATCTTGAATTAAGCTGGAAAACTAAATGGCAGAA
ATGTCGTTTTTCCCCCTCCCAACATTGGTGTTTGTGTAAGTGTGTGTGTG
TGTGTGTGTGTGNGNNNTNNNNNNNTTTNTTTTTTTTTTTTTTNTTTTTN
TTTTTTTTTTTCTNTTTTTTNNNNTTTTTTTNNNNTTNTNTTTNTTTTTT
TTTCTNTNNTTTCCCNTTTTTNTTNTTTTTTNNTNNCCCCNTNTNNTTTN
NNNNNNTTTTTTTTTTNNNTTTNTNNTTTTTTTTTTTTTTTNTNTTTTTT
TTCCCCCCCCCCCCCCCCCNCCCCCCCTTCCCTATCCCCTTCTCCTTTTT
TTGGTCCCAAACAACCCCCTCAAAAAAAAAAAAAAAACAAAAAAAAAATA
CACCCAAAACACCCAAACCACAACACCAACCACAACCCAAAAACCAAACA
TACACCACACAAACACAAAACCCCACACACCACCACAAAAAAACCAAACC
AACCCACCACACAAACAAAACACCCACACACCAACAAAACAACAAACCAA
AACAACCCAATACCCCCCACACCAACACCCCACCCAAAAAACCAATACCC
CAACCCCACCCAAAAACCCCACAAAAAAACCCCACCAAACCCCAAAAACA
AAAATAAACCAACAACAATCCCCCAACCCCCACCATCACAAAACCAACCC
CCACAAACACAAACAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_k16.b1 MSMg01no327_k16.b1 CHROMAT_FILE:
MSMg01no327_k16.b1 PHD_FILE: MSMg01no327_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:37 2005
         (246 letters)



>mm_chr12_76509758_76510403
          Length = 646

 Score =  447 bits (231), Expect = e-130
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatagtaacaatatttgcaccctcatttccaaaacagtgtgttgtacaccatcaaagtt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 aaatagtaacaatatttgcaccctcatttccaaaacagtgtgttgtacaaaatcaaagtt 260

                                                                       
Query: 61  taaataagtatttatggaaaagaaggcagtggaatggagagaagggaaagacactattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataagtatttatggaaaagaaggcagtggaatggagagaagggaaagacactattat 320

                                                                       
Query: 121 aaatcctagcagatattttcctccttttccttggtaactttcctgactgtaatatatatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aaatcctagcagatattttcctccttttccttggtaactttcctgactgtaatacatatt 380

                                                                       
Query: 181 tgttgcagtttttaatcccatgggctagcatctccactgtcttttgggcggnaccacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tgttgcagtttttaatcccatgggctagcatctccactgtcttttgggcggtaccacaca 440

                 
Query: 241 ctctgc 246
           ||||||
Sbjct: 441 ctctgc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)