BAC Information

Click to search

BAC

Clone NameMSMg01-327O05
Chromosome12 (Build37)
Map Location 5,302,202 - 5,302,524
singlet/doubletsinglet
Overlap geneKlhl29
Upstream geneNcoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332
Downstream gene2810032G03Rik, LOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327O05.T7 (MSMg01no327_o05.b1)MSMg01-327O05.TJ (MSMg01no327_o05.g1)
ACCAG445128AG445129
length755747
length of high quality
(start - end)
331 (48 - 378)339 (78 - 416)
definitionCHROMAT_FILE: MSMg01no327_o05.b1 PHD_FILE: MSMg01no327_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:52 2005CHROMAT_FILE: MSMg01no327_o05.g1 PHD_FILE: MSMg01no327_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTACCTTACTCAGACTTAGCAATGCTCTTCTCGAAACCCAGTG
CTCAGGAAGCAGACACGGGAGGATCTCTGTGCGTTTGAGTCCGGCTAAGC
CTACATAGGACTTAGCTGTGTGGAGGACACTGCTTAAAACAACAAAATAT
TACTAGAAAAAGATTATTTGCTTTTTATTGATTTTTTTTTTTAGTTTGGG
AGCAGGAGGTGGGGAGCTGGAGAGGTGGCTCAGCCGTTAAAGGCTAGGCT
CACAACCAAAAAGATTGTTTTATTTTTGAATTAATATCATTTTCTTCCTT
CCCTTTCCTTCCTCTATTCCCTCTCAAAACCAAGGCCTCCTTCTTTAAAC
ACATACATTATGAGCCCCACAACGCCCCCCCACATAAATGCAACCTGCTC
CATCCATTTATCATCGTCTATATGCATATGATATTATGCCTCACCTTGCG
ATATTGGATCATCACTACATGATCCTCGAACTCCGCAAAGTTTCTCTTAG
TTTTCTTGCCATTCCATTGCTTCCCCGCTTCAGCCCCCCGCCTACCTCTC
CATTTTCCCCCCCCCTGTCCCCCTCGCTTTTCCCACCACCCCTCCACTAC
ATTATACCGTATTACCTCTCTGCCCTCTCTATCATCTCCCCCTTCCTCCT
TCCCCCTCTTTCTTTCCCCCACATCCCTTAACCTACTTCCCCCCCCCCCT
TTCTC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATCTAAGCATGAAGACTGGAG
TTCAGATCCCAGGGCCCTCATAACAAGTGGGTCTTGAGCACAGCTATAAC
CCCAGGAGAGAGTGGGTAAGACCGGGATGGTTTCTGTGCATGCTGGCCAT
TAGCTTAGTCAAATAAACTCAAGCTCCACGTTCAACGAGAGACCATGCCT
CAAAGGCTTAATAAGGTTTAAGTGTGTGTACCTACCATGTGCACATACAT
TGTGCATATATAACCATAGTCACACGCATTCTTTCTTCCCCACCCCTCCC
TTTCTCTCTCTCTCTCTCTCTCACACATGAATATAAAGAAAGACAAAAAT
ACAGAAATTGTTTCTGGCCCCCCCCCAACTTCTAGATCCTGCCTGTTCAA
ATGGCTAGGGAGATCAGAAGCTTTCAGAATTACCACAAGGTGACGCCCAA
ATCTGGTGGTTTCTAAGGTTCTGGGGCACAGATTTGAATAGATAGCAAGG
CATCTTGGGCCCCTGAGACTGGTTCCTTAAGATACTCTCGGTTACCATGG
ATGAGTATGGTTGATCATTCGCTCAATATTCCTAGGAGACCATTGTTCCT
CCCGCTGGCATTTCCAATGAGGACCCGACCCTTGCTACTCGATTCCGTGA
CCCAGGTTTTGCTATGCCTTTTTTTTCTTTGTTTTTTTGTTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_o05.b1 MSMg01no327_o05.b1 CHROMAT_FILE:
MSMg01no327_o05.b1 PHD_FILE: MSMg01no327_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:52 2005
         (331 letters)



>mm_chr12_5301891_5302617
          Length = 727

 Score =  540 bits (279), Expect = e-158
 Identities = 314/329 (95%), Gaps = 8/329 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaccttactcagacttagcaatgctcttctcgaaacccagtgctcaggaagca 64
           |||||||||||  | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 634 gaattcttaccagaatcagacttagcaatgctcttcttgaaacccagtgctcaggaagca 575

                                                                       
Query: 65  gacacgggaggatctctgtgcgtttgagtccggctaagcctacataggacttagctgtgt 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gacacgggaggatctctgtgcctttgagtccggctaagcctacataggacttagctgtgt 515

                                                                       
Query: 125 ggaggacactgcttaaaacaacaaaatattactagaaaaagattatttgctttttattga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaggacactgcttaaaacaacaaaatattactagaaaaagattatttgctttttattga 455

                                                                       
Query: 185 ttttttttttt--agtttgggagcaggaggtggggagctggagaggtggctcagccgtta 242
                ||||||  | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 454 -----ttttttaaaatttgggagcaggaggtggggagctggaaaggtggctcagccgtta 400

                                                                       
Query: 243 aaggctaggctcacaaccaaaaagattgttttatttttgaattaatatcattttcttcct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaggctaggctcacaaccaaaaagattgttttatttttgaattaatatcattttcttcct 340

                                        
Query: 303 tccctttccttcctctattccctctcaaa 331
           |||||||||||||||||||||| ||||||
Sbjct: 339 tccctttccttcctctattccc-ctcaaa 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 727
Length adjustment: 9
Effective length of query: 322
Effective length of database: 718
Effective search space:   231196
Effective search space used:   231196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)