BAC Information

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BAC

Clone NameMSMg01-328A10
Chromosome12 (Build37)
Map Location 83,516,086 - 83,516,458
singlet/doubletsinglet
Overlap geneSipa1l1
Upstream geneAdam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
Downstream geneLOC432675, EG666911, Rgs6, Dpf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328A10.T7 (MSMg01no328_a10.b1)MSMg01-328A10.TJ (MSMg01no328_a10.g1)
ACCAG445230AG445231
length719709
length of high quality
(start - end)
375 (47 - 421)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no328_a10.b1 PHD_FILE: MSMg01no328_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:03 2005CHROMAT_FILE: MSMg01no328_a10.g1 PHD_FILE: MSMg01no328_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCCTACCTCCCCAGTGATTTGCTCCTTTATTCATTAGGGGAT
GGTTCACAAGTCACCAGAGTAGGTGACTCATTCCTCACAACCCCTCCCAG
GAGAGCGGAATTGGCATCAAAATACAAGCAAACCCGGGGCTGTCCACAGC
TACAGGGTTTTGGTGATGTCTTATGGACAAGGCAGACTTTAGAGAAGCCT
CTAGCACTGGTTGGCATTGTGGAAGAACATCGGTAGGAGCTATTGGAGGG
GTGGGATGGAGAGAGCCTGGAAGTCGGGAGACCGTTGGGTGGAAGAGATC
AGAGGGCAGTCATGGTGGAGCCCATGACGTCAAGCCATACTTTCAAGACC
ACTACCTATGGTGCCAGACACCCCCCGCGTGTAGTCCACAAATGTGCACA
TTAGGACAATTAACTCTGAAAGTTAGGAGGCAAAGGAAGCATGGCTTCAG
TGTGCTTAACTTGTTAGAACAAATATAGGAGGGACCGGTTCCACTCACAA
CACGGGAGGAAAGCTGTTAGATTTGAAGAGGCTTGATTTGAATTGCTGAG
TCTCCTCAAGTCTCTCGGATTAAGGAGCAGTATCTTAGGAGACAGCCAGA
GAGAACTCTGATCTGTCTCATAGGTCATTGCAGTGCTAAACTCTGAACAG
CTCTCCTTACCTCCCTCTC
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACCTGGTCTCTCAAGCGAAACTAAAG
GACTTACTGGGTATAATGGCTCATGCCTGTAATTCCAGCACTTGAGAGAC
TGAGTCTCTCAGGAGGTCAAGGTCATCCTGAGCTACGTAGAGATCTGTAG
CCAGTCTGAGCTACATGAGACCCATAAGACCAGCAGGAAGACTCAGGGGG
TAACACTGCTTGCTGCTAAGCCTGAGGCCTAAGCTTGAGCTCAGAACCCA
CGTGATGAGGTGAGAGAAATCACTGCTACAAGTGGTCCTCTGACTTCCAC
ACATGTACTGTGGTATGCACAGGCACACACATACACAAATACATACATAC
ATACATACATACATACACCCCTACATACATACATACATACTTACATACAA
CTTTTTAATTACAGAAACACAAAACCAAAGAGATCAATTATTTTTTTTAA
TTGAGTTGAAATGCTTATCTTTTAATAGCTCAATCCAGATGAATCTGGGG
TGGTCTCTTGTATCCTGAATATTTGTGGAACAATAGCGTAGTGTAGGATG
GTGAACGATACAGGAGGAGCCTGGATGTATTTTTATCCATGAAGCTTTAT
GACACTGTATGATGACCTATAGAGGCAATCTATTGCTTCAAGGTTCTATC
TCCCAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_a10.b1 MSMg01no328_a10.b1 CHROMAT_FILE:
MSMg01no328_a10.b1 PHD_FILE: MSMg01no328_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:03 2005
         (375 letters)



>mm_chr12_83515883_83516658
          Length = 776

 Score =  706 bits (365), Expect = 0.0
 Identities = 371/373 (99%), Gaps = 1/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgcctacctccccagtgatttgctcctttattcattaggggatggttcacaa 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgcctacgtccccagtgatttgctcctttattcattaggggatggttcacaa 263

                                                                       
Query: 64  gtcaccagagtaggtgactcattcctcacaacccctcccaggagagcggaattggcatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtcaccagagtaggtgactcattcctcacaacccctcccaggagagcggaattggcatca 323

                                                                       
Query: 124 aaatacaagcaaacccggggctgtccacagctacagggttttggtgatgtcttatggaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatacaagcaaacccggggctgtccacagctacagggttttggtgatgtcttatggaca 383

                                                                       
Query: 184 aggcagactttagagaagcctctagcactggttggcattgtggaagaacatcggtaggag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggcagactttagagaagcctctagcactggttggcattgtggaagaacatcggtaggag 443

                                                                       
Query: 244 ctattggaggggtgggatggagagagcctggaagtcgggagaccgttgggtggaagagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctattggaggggtgggatggagagagcctggaagtcgggagaccgttgggtggaagagat 503

                                                                       
Query: 304 cagagggcagtcatggtggagcccatgacgtcaagccatactttcaagaccactacctat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagagggcagtcatggtggagcccatgacgtcaagccatactttcaagaccactacctat 563

                        
Query: 364 ggtgccag-acac 375
           |||||||| ||||
Sbjct: 564 ggtgccaggacac 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space:   280722
Effective search space used:   280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)