Query= MSMg01no329_k06.b1 MSMg01no329_k06.b1 CHROMAT_FILE:
MSMg01no329_k06.b1 PHD_FILE: MSMg01no329_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:10 2005
(459 letters)
>mm_chr12_5932153_5933012
Length = 860
Score = 779 bits (403), Expect = 0.0
Identities = 446/469 (95%), Gaps = 17/469 (3%)
Strand = Plus / Minus
Query: 4 ggaattctgtgagag-acagcaagcaattgttcagtggtattgaggggagacatctgcca 62
|||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggaaatctgtgagagaaaagcaagcaattgttcagtggtattgaggggagacatctgcca 554
Query: 63 attagtacatcacaggcaggtgttgtaagagccagccttgtggagtctgcatgcaagaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attagtacatcacaggcaggtgttgtaagagccagccttgtggagtctgcatgcaagaga 494
Query: 123 accatgtgtccaagtctgttatcccattggccccatgctagtccccaatcaagactgaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 accatgtgtccaagtctgttatcccattggccccatgctagtccccaatcaagactgaat 434
Query: 183 cacagctgacatttcccccttcttggacagtaacagtaataccactagtcatttgacagt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cacagctgacatttcccccttcttggacagtaacagtaataccactagtcatttgacagt 374
Query: 243 tttattacaaaattattttatattttgacaatctaaaaagccttttgattgtttccttgc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttattacaaaattattttatattttgacaatctaaaaagccttttgattgtttccttgc 314
Query: 303 ctaataattaatgtgattctctggatcaaaagtggtgaagatctttgtgcataaggatct 362
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctaataattaatgtgattctctcgatcaaaagtggtgaagatctttgtgcataaggatct 254
Query: 363 agcgtccccc----acactttccttgccttttcataaaactatccttt--------tgtt 410
||||| | | | |||||||||||||||||||||||||||||| ||||
Sbjct: 253 agcgt----ctaataaattttccttgccttttcataaaactatccttttgtttgtgtgtt 198
Query: 411 tgatgctgaagagtgaacctcatatgtgctgtataagtgctataccttc 459
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 197 tgatgctgaagagtgaacctcacatgtgctgtataagtgctataccttc 149
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 860
Length adjustment: 10
Effective length of query: 449
Effective length of database: 850
Effective search space: 381650
Effective search space used: 381650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_k06.g1 MSMg01no329_k06.g1 CHROMAT_FILE:
MSMg01no329_k06.g1 PHD_FILE: MSMg01no329_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:10 2005
(250 letters)
>mm_chr12_5783914_5784564
Length = 651
Score = 462 bits (239), Expect = e-135
Identities = 248/251 (98%), Gaps = 1/251 (0%)
Strand = Plus / Plus
Query: 1 agggatggcaaaagcaaggtggggggagtcctctacaggtggcagaaagagaatgtggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggatggcaaaagcaaggtggggggagtcctctacaggtggcagaaagagaatgtggca 260
Query: 61 ggaaagaagaggtgagatctgaggtgtctttcactaacagcaagggctgtggagaaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaagaagaggtgagatctgaggtgtctttcactaacagcaagggctgtggagaaacag 320
Query: 121 aaagtggatttttttttt-ctggcagacaaggagcgctctcatggttttatagccagaag 179
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagtggatttttttttttctggtggacaaggagcgctctcatggttttatagccagaag 380
Query: 180 atgacattgtcaagaggccacttcacagatgtcattctggtgaccataggtgggtgggtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgacattgtcaagaggccacttcacagatgtcattctggtgaccataggtgggtgggtt 440
Query: 240 gtgctgagatg 250
|||||||||||
Sbjct: 441 gtgctgagatg 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 651
Length adjustment: 9
Effective length of query: 241
Effective length of database: 642
Effective search space: 154722
Effective search space used: 154722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
