BAC Information

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BAC

Clone NameMSMg01-330M15
Chromosome12 (Build37)
Map Location 121,030,905 - 121,031,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330M15.T7 (MSMg01no330_m15.b1)MSMg01-330M15.TJ (MSMg01no330_m15.g1)
ACCAG447250AG447251
length745756
length of high quality
(start - end)
525 (71 - 595)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no330_m15.b1 PHD_FILE: MSMg01no330_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:35 2005CHROMAT_FILE: MSMg01no330_m15.g1 PHD_FILE: MSMg01no330_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATT
CTGTCTTTCTCGCCCCCAGGCAGGTCTATTTATTAAACTCTATTATTTTC
TAGGATATTATAATGTTTCTCACAATGCTCTAGGACAGACATCCTCTAAC
AGAATAATCTTGTCAAATTTTGTCTTCTTGAAAATAATTGAAGTCTGTTT
TTGACTCTTTGTTGGTGTTTGACCCAAAATTATGGCTACTAGTTTCTCAT
TCCATGGTGATTTCTCACAAACTCAATAGCTTACAAAGTTAACTGTGTCT
TCAATTTCCTTCCAAGTACTCTTCACCATAGTCTCCATGGTTCTTAAGAG
TACTCCCAAGTTTGCCCTTCTTAAACTATGCTGAAAATGAGTCAGTTCTT
CCTTTCTAAGATTACATTCTATTTTTAACTTGCCTCTCCTCATCTCCACT
TCTAGCAAAATCTCAGGGCTGAAACTTCTAGCATAAAGTCAGAGCTGTGG
ATCTGTGAACATCAATAACCAACATCTCAAGTGAATCTTGGTAGAGAAAT
GGTAAGCATCCTACAGATTTCCTGTCTGGCCTTTGAGCATTGAACCATGA
AGCTTAATGGAAGGTGATCAGGTCTTCGCTGTCTAGACAACTTACATTCC
CGTATACTTTCTACTCCCTAAGTGGGAACTGCGAAACTGAAATGATCAAC
AATTTCTTACTTGGAATTACCCAGGTCTTCTTTCCAAATAAGAAG
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGTAGATTCGTTTTAGCCTGTAA
CTGTGATAGCTTCTGTGGTCAACTTGCCACAAACTAAGGGATATCTGGAA
AGAGAAACTTCAACTAAAGCAGTCCCTTGATCAGATTGGTCTATTGTCAT
GTCTGAGAGACATTTTCTTGATTGCTATTTGATATAGGAGGGCCCAGACC
ACTGTGAGTGGTGCTATCCCTAGGCATGTGGGCCCAGACTCTGCAAGAAA
GAAAGCTGAGCAAATCAGAGGTAGTAATCCAGTAAGCAAAGCTCCTCTAT
GATTCCTCACTCTGTTTTCTCNTGAACCCCCGCCCCGACTTGCCTCAATG
ATAGTCTGTGGTCAGAAAGCATAAGCTAGATAAATAAAATTCACACTAAG
TTGGTTCTGGTCATGTTGTTTATCATAGCAACAGAAATAAAGTTATCTAA
AGATATTTCACCTATTTTTTCTAGAGGTTCTGTCATAAGATCAGGTGTTT
TTAAAGATATGAAGCCATAAGTAAGAAGCATACCACTAAAGATCCAGTTT
TCTATGCTGAAGACCTGTTGTGATAATTTTTACATCAAAACTAAAGATGA
GTCAGTCGAAACTTTTCTTAGATGACAGTGATTCCTAGTAGCTTCGGTAG
GAATATGCCCAATATTGAATTTAGCAGATATTGTGCAGGCAGCTATTGTT
TGTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_m15.b1 MSMg01no330_m15.b1 CHROMAT_FILE:
MSMg01no330_m15.b1 PHD_FILE: MSMg01no330_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:35 2005
         (525 letters)



>mm_chr12_121030705_121031629
          Length = 925

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggtctatttattaaactctattattttctaggatattataatgtttctcacaatgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggtctatttattaaactctattattttctaggatattataatgtttctcacaatgctc 260

                                                                       
Query: 61  taggacagacatcctctaacagaataatcttgtcaaattttgtcttcttgaaaataattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggacagacatcctctaacagaataatcttgtcaaattttgtcttcttgaaaataattg 320

                                                                       
Query: 121 aagtctgtttttgactctttgttggtgtttgacccaaaattatggctactagtttctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtctgtttttgactctttgttggtgtttgacccaaaattatggctactagtttctcat 380

                                                                       
Query: 181 tccatggtgatttctcacaaactcaatagcttacaaagttaactgtgtcttcaatttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatggtgatttctcacaaactcaatagcttacaaagttaactgtgtcttcaatttcct 440

                                                                       
Query: 241 tccaagtactcttcaccatagtctccatggttcttaagagtactcccaagtttgcccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccaagtactcttcaccatagtctccatggttcttaagagtactcccaagtttgcccttc 500

                                                                       
Query: 301 ttaaactatgctgaaaatgagtcagttcttcctttctaagattacattctatttttaact 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttaaactatgctgaaaatgagtcagttcttcctttctaagattagattctatttttaact 560

                                                                       
Query: 361 tgcctctcctcatctccacttctagcaaaatctcagggctgaaacttctagcataaagtc 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctctcctcgtctccacttctagcaaaatctcagggctgaaacttctagcataaagtc 620

                                                                       
Query: 421 agagctgtggatctgtgaacatcaataaccaacatctcaagtgaatcttggtagagaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagctgtggatctgtgaacatcaataaccaacatctcaagtgaatcttggtagagaaat 680

                                                        
Query: 481 ggtaagcatcctacagatttcctgtctggcctttgagcattgaac 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtaagcatcctacagatttcctgtctggcctttgagcattgaac 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)