BAC Information

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BAC

Clone NameMSMg01-330N09
Chromosome12 (Build37)
Map Location 66,800,915 - 66,801,229
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330N09.T7 (MSMg01no330_n09.b1)MSMg01-330N09.TJ (MSMg01no330_n09.g1)
ACCAG447285AG447286
length765765
length of high quality
(start - end)
321 (45 - 365)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no330_n09.b1 PHD_FILE: MSMg01no330_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:38 2005CHROMAT_FILE: MSMg01no330_n09.g1 PHD_FILE: MSMg01no330_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCACACTACTCTTAGAGTGGCTTAACCATTTTGCAGTTTGGCCAA
TGGTGAGTAAGGCTTTTGATATTTCTAACCCTCCACTTATAATATTTAAA
ATTTGGATTGTAGTGGTAATACAAATGTACAAAGAAGTCAAACATTAAAT
ACTTTTTTTTTACTTAGAAATTCAATAGTCAAGAAGCAAAATAATTGTAA
ATGTAACAGATTCATATAGAGGATTAAAAAATCTGGTATTCATTTTAAGG
GTTTTTCTAGTATCTCATATTTCAATAAAATTTGCTATATACAACAGCAC
AGATTAGCATGATTTTGTGATTTTACCCCACCCCCCCAACAGTATGTCTA
GTAGTTTCCAAATATACAAGAAGATTTCTCCAAATATGATATTATATGTT
GTAAATTAATGGGAATAAAAGAATCATCTGCCCAGAGGTAATGACAGTGG
CTAGCTCTAGGATACTTAGATAATCCTGTAGTGCAGTGGAGAGGTGGTTA
GCTCTGAGTTGCTGTGCACAGCTCTGATGAGAAAGAGTGGAAAGCATTCA
TTGGCACTGTCAGACAGGTCTTGTTTCTTTGATGTGGTTACAAGTAAATT
GTTTCTTTTCTAAAGGTAGGCATTCATATTTTAGAGATCATTCTGAATAC
CTATATCCTATAATGGAAAGTATATAGGATGTAAACATAGTATGCATATT
AATTAATTAATAAAA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCATTGTCTCTTGACCTCCAG
AGAGTTTATTTGGACTACTTCAGATGATACTCACAGAGTCTGAGAGAAAG
AATGAGCTGAGAGCTGAGGAGTAGATGGACAACTGGCATACTATTGATCC
TTCCATATTTTTTGAACAAAACAATTTATAAGGTTAGCTCAGATGGAAAA
TGAGACCATGCCTCTAAAAGAAAAGACAGTTCTACTGGGACTAGCCACCA
CATCTATGCATCTTGATTGGTTATAGTTTTCTGTAATGGTCTCTGTCTTT
TGAAAAAAAAAAGTGTCTTCTGTATGACCCCCCCCGAATTATCTGTGGGT
ATAAGGATAAATGTTTAGAATGCAGTTAGGGATTGTGCTGTTTCAGTAAA
GTAGCAGTTGTAGGCTTTTCTGACTTCACTAGGTCTAGATGGCTGGCTAT
GCTTCCAGTACCAGGCATCGTTTTCCTTAGTGTGAGGGTCTTAAGTCCAA
CTGAAGAGCTGTTGGTTACTGCTAATGCATGTGCTCTACTATTGCACCTT
TAGGGTTATAGCACCATGCAGTCATTCATGTGATTCACAGGCTTCATGTC
TGTTGGTTGCTGTCTTCCTTTGAAAGCTTGCATGACACCTTCTTTTATAG
TAAAAGCTAGTTATCAGGGAAAAGGCTTTGAAATCATTTCCATCTCAGAG
GCCTCTGTGTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_n09.b1 MSMg01no330_n09.b1 CHROMAT_FILE:
MSMg01no330_n09.b1 PHD_FILE: MSMg01no330_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:38 2005
         (321 letters)



>mm_chr12_66800711_66801432
          Length = 722

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccacactactcttagagtggcttaaccattttgcagtttggccaatggtgagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccacactactcttagagtggcttaaccattttgcagtttggccaatggtgagt 264

                                                                       
Query: 65  aaggcttttgatatttctaaccctccacttataatatttaaaatttggattgtagtggta 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggcttttgatatttgtaaccctccacttataatatttaaaatttggattgtagtggta 324

                                                                       
Query: 125 atacaaatgtacaaagaagtcaaacattaaatacttttttttt-acttagaaattcaata 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 atacaaatgtacaaagaagtcaaacattaaatacttttttttttacttagaaattcaata 384

                                                                       
Query: 184 gtcaagaagcaaaataattgtaaatgtaacagattcatatagaggattaaaaaatctggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcaagaagcaaaataattgtaaatgtaacagattcatatagaggattaaaaaatctggt 444

                                                                       
Query: 244 attcattttaagggtttttctagtatctcatatttcaataaaatttgctatatacaacag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcattttaagggtttttctagtatctcatatttcaataaaatttgctatatacaacag 504

                          
Query: 304 cacagattagcatga 318
           |||||||||||||||
Sbjct: 505 cacagattagcatga 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)