BAC Information

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BAC

Clone NameMSMg01-330P22
Chromosome12 (Build37)
Map Location 43,420,345 - 43,420,580
singlet/doubletsinglet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P22.T7 (MSMg01no330_p22.b1)MSMg01-330P22.TJ (MSMg01no330_p22.g1)
ACCAG447406AG447407
length716732
length of high quality
(start - end)
293 (419 - 711)236 (125 - 360)
definitionCHROMAT_FILE: MSMg01no330_p22.b1 PHD_FILE: MSMg01no330_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:50 2005CHROMAT_FILE: MSMg01no330_p22.g1 PHD_FILE: MSMg01no330_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTGCGGCGCTAATAGATACTNATCANGAGGGGNGGGATTCTTTG
TTTTTCCAGAGAGATTTTTTTATGGGGTATTTGAATTTCTGGAGTTCAGT
TTTTTAACCCTTGTATATATTGGATATTAGTCCCCTATCAATTTAGGATT
GGTAAAAATTCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGAATA
TCTTTTGCCCTACAGAAGCTTTGCAATTTCATGAGGTGCCATTTGTCAAT
TCTTGATCTTACAGCACAGGCCATTGCTGTTCTGTTTAGGAATCTTTCCC
CTGTTTTTTATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATTATTTTTT
TTGTCCCTGGCTTTATTTGGAGTTCTTTGATCCACTTAGATTGAGCTTTG
TACAAGGAGATAAAAAAGGATCAATTCGTAGCCTGGCATGGTGGCACATG
TCTTTAATCCCAGCACTCAGGAGGCAGGGGCAGTCAGATTTCTGAGTTCC
AGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACCG
AGAAACCCTGTCTTGAAAAAAAAAATAACAAAACAAAACAAAACCAACCA
AACAAAAATCCAACCAACCAACCAAACAAGCAAACAAACAAACAAACAAA
CAAAAAATCAACAACAACAACAAAGAATGGATCAATTTCCATTCTTCTAC
CTGATAACTGCCACTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCGAAAATCAATATTCCTTGCTTATATTCATTCTTGTG
TTACCATCTTTGTCTTTCTTTCCTATTCTTTGGACATATAAACAATGGTG
AGAGTTTACTTTTGAATACCCCGAATTTGAAACACTTCAATAAAAGTTGT
CTATGAGAATTTGCATTTTTACAATTTAGAAAGGAACTCTGGGCCAAAAT
TATGCACGTAACTTTCACAGATAATAGTTTAAACTGTGAGATTGTCTGGT
TGTACTTTCAGATCTCATAATTATTAGGAGTTTACCACCATTCTTTAATT
TATCCCCTGTATTGTTTCTAGCGCGCCACCAAAAACAGTTTAGTGAAGGC
CTTTCTTGTTTGCCTCTTACCAAAACACAAAAAATCTACCTATCTATCTA
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC
TATCTATCATCAATCATCTGTATATTATTTATCACCTGCCATAGAACTCT
TGCTTTTGAAAACTGTTTAACAGTGGTCCAAATGCCAAAAATAAAATCAA
GGTTAAAACTGTAAGCAATCTGCACAATAATATTTATAANATTTTGTAAA
TATCAACTCTTTGGTGGATCATGGTTTATCTTACATGCTTTCTTAACAAT
TCTTCAGATAAAAATATGTACATTTTGATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p22.g1 MSMg01no330_p22.g1 CHROMAT_FILE:
MSMg01no330_p22.g1 PHD_FILE: MSMg01no330_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:50 2005
         (236 letters)



>mm_chr12_43420145_43420780
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctttggacatataaacaatggtgagagtttacttttgaataccccgaatttgaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttggacatataaacaatggtgagagtttacttttgaataccccgaatttgaaaca 260

                                                                       
Query: 61  cttcaataaaagttgtctatgagaatttgcatttttacaatttagaaaggaactctgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcaataaaagttgtctatgagaatttgcatttttacaatttagaaaggaactctgggc 320

                                                                       
Query: 121 caaaattatgcacgtaactttcacagataatagtttaaactgtgagattgtctggttgta 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaattatgcatgtaactttcacagataatagtttaaactgtgagattgtctggttgta 380

                                                                   
Query: 181 ctttcagatctcataattattaggagtttaccaccattctttaatttatcccctgt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcagatctcataattattaggagtttaccaccattctttaatttatcccctgt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)