BAC Information

Click to search

BAC

Clone NameMSMg01-331C21
Chromosome12 (Build37)
Map Location 65,735,935 - 65,736,278
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302, EG623046
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331C21.T7 (MSMg01no331_c21.b1)MSMg01-331C21.TJ (MSMg01no331_c21.g1)
ACCAG447544AG447545
length746738
length of high quality
(start - end)
373 (47 - 419)671 (66 - 736)
definitionCHROMAT_FILE: MSMg01no331_c21.b1 PHD_FILE: MSMg01no331_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:03 2005CHROMAT_FILE: MSMg01no331_c21.g1 PHD_FILE: MSMg01no331_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATCCGCGG
AATTCACTACATCTATGCCTATCTGCATAGGACCTGAACAAGATTTGGCC
CTCAATGTGAGCTGAAAGGGGTATTTCAGATTCAAACTACTATTGGCTCT
AATCTGAGAGCCCTTGTTCTTGGGAGAGGAAAGAAGAGAGTGGGGACATA
GCTCAGTCAATAAAACGTTTCCTGCCAAAGCCTGAACACCCGTGCTTGAT
CCCAAAGCTCAGGTATAAAACCCGAGGTGGTAGCTAGTATTTGTATTTCC
AGGCTGGGGGAAGCTGAGACAAGTGTCCAGGTAGCCTAGACGAATGCATC
CTAAGCCTACTTATGTAAGGTAGGCACATCAGTTTAATTGTGAATATGCT
AGTTTTACTGTTTGGGATAACACCACAAAGCCCTCTTGGGAATTTTATAG
ATCACATGTGCTATAGATATGTTTTCTTTATTTCTCATATATAAGTTTTT
TTTGAGAAAAATACATTAAATTAAAATAATATGTCTCCAAAATAATTAAG
TGAGGAGTGGTGCTATATGAAAATAGAAAAGAAATTTGTGGTGAAACGAC
ATTCCAAGCCATTGTCTTCTCATGTTATCAGATTTCCAGCTGGGTGAGAC
TTCAGGCATAATCACAGATCAGTATGCTTGGAGTGACTATCTTAACACCC
ACTAATTCTTCTACAAACTCGGGATAAATCTAAACCCCTCTTAATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATCCCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATGCA
GGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGATTTCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTACATCCGCAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGATAAGAAGGACACATG
CTCCACTATGTTCATAGCTGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAG
CCCCAAACCTAGGATACCCAAGATATAAGATACAATTGGCTAAACACATG
AAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_c21.b1 MSMg01no331_c21.b1 CHROMAT_FILE:
MSMg01no331_c21.b1 PHD_FILE: MSMg01no331_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:03 2005
         (373 letters)



>mm_chr12_65735935_65736707
          Length = 773

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcactacatctatgcctatctgcataggacctgaacaagatttggccctcaatgtg 63
           |||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaattcaccacatctatggttatctgcataggacctgaacaagatttggccctcaatgtg 285

                                                                       
Query: 64  agctgaaaggggtatttcagattcaaactactattggctctaatctgagagcccttgttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agctgaaaggggtatttcagattcaaactactattggctctaatctgagagcccttgttc 225

                                                                       
Query: 124 ttgggagaggaaagaagagagtggggacatagctcagtcaataaaacgtttcctgccaaa 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 224 ttgggagaggaaagaagagagtggggacatagctcagtcaataaaaggtttcctgccaaa 165

                                                                       
Query: 184 gcctgaacacccgtgcttgatcccaaagctcaggtataaaacccgaggtggtagctagta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gcctgaacacccgtgcttgatcccaaagctcaggtataaaacccgaggtggtagctagta 105

                                                                       
Query: 244 tttgtatttccaggctgggggaagctgagacaagtgtccaggtagcctagacgaatgcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 tttgtatttccaggctgggggaagctgagacaagtgtccaggtagcctagacgaatgcat 45

                                                       
Query: 304 cctaagcctacttatgtaaggtaggcacatcagtttaattgtga 347
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  cctaagcctacttatgtaaggtaggcacatcagtttaattgtga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)