Query= MSMg01no331_h03.b1 MSMg01no331_h03.b1 CHROMAT_FILE:
MSMg01no331_h03.b1 PHD_FILE: MSMg01no331_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:21 2005
(630 letters)
>mm_chr12_107194385_107195415
Length = 1031
Score = 1052 bits (544), Expect = 0.0
Identities = 599/634 (94%), Gaps = 28/634 (4%)
Strand = Plus / Plus
Query: 5 gaattcaggtttatgcaca-aatcctgctctgggcggggcttcagagcccctccccccca 63
||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtttaagaagacaatcctgctctgggcggggcttcagagcccctccccccca 264
Query: 64 tctatgtctcctggtattgtctcattctagggtgtgaaggcttccttctttctttcgtct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctatgtctcctggtattgtctcattctagggtgtgaaggcttccttctttctttcgtct 324
Query: 124 gaaccctgtgaggaataaagtagggtaaccgtttgagaatccaaatgattccacagatca 183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 gaaccctgtgaggaataaagtagggtaaccgtttgagaatccaaatgattctacagatca 384
Query: 184 acaaaacccgggaggagaaaaatgtcctgatgattagactaaacaaaccaggttggacct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaaaacccgggaggagaaaaatgtcctgatgattagactaaacaaaccaggttggacct 444
Query: 244 tagagagagacctggccaacaaaccaggctgaatgcagagagaggcagggccagaagtgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagagagagacctggccaacaaaccaggctgaatgcagagagaggcagggccagaagtgg 504
Query: 304 gagtctcacttggcgttgttcacccttgtcttgactgactttcttcattaaagtatgtgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagtctcacttggcgttgttcacccttgtcttgactgactttcttcattaaagtatgtgg 564
Query: 364 ggactttccaacatttgtaccaagtgtctttctcacacacacacacacacacacacacac 423
|||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 565 ggactttcgaacatttgtaccaagtgtctttc--------------------acacacac 604
Query: 424 acacacacacacacacacacacatgtttcttcatgtaggcagcacagtgcaattgtgccc 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acacacacgcacacacacacacatgtttcttcatgtaggcagcacagtgcaattgtgccc 664
Query: 484 ttcccttaccactctcttggtgacatttcacaagt-------tctttcttctttcttctt 536
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 665 ttcccttaccactctcttggtgacatttcacaagtcctttcttctttcttctttcttctt 724
Query: 537 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 784
Query: 597 cttcttctcctcctcctcctcctcctcctcctcc 630
|||||||| |||||||||||||||||||||||||
Sbjct: 785 cttcttcttctcctcctcctcctcctcctcctcc 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 135
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_h03.g1 MSMg01no331_h03.g1 CHROMAT_FILE:
MSMg01no331_h03.g1 PHD_FILE: MSMg01no331_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:21 2005
(645 letters)
>mm_chr12_107307237_107308287
Length = 1051
Score = 1178 bits (609), Expect = 0.0
Identities = 638/651 (98%), Gaps = 6/651 (0%)
Strand = Plus / Minus
Query: 1 acagagggatgttggcaatgaatataaaacttatgttcttcatgtagccttatcctatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acagagggatgttggcaatgaatataaaacttatgttcttcatgtagccttatcctatgt 792
Query: 61 aagtatgaatctaagtgtgtagcactctgaattctaatgcaaagcctacgcttcctgatg 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 791 aagtatgaatctaagtgtgtagcactctgaattctaatgcaaagcctatgcttcctgatg 732
Query: 121 gacctatggaccattgaggaggatgtctgactccacagcatgatgcaatgggtcctcaca 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 731 gacctatggaccattgaggagggtgtctgactccacagcatgatgcaatgggtcctcaca 672
Query: 181 tgatcaacacatcctcacttactctgtctagcaattaatattaagttcattcagcttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgatcaacacatcctcacttactctgtctagcaattaatattaagttcattcagcttcat 612
Query: 241 ctgaaagtgttccttgcttcgggccattctgtgtacagctgcagaagataatatttactg 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgaaagtgttccttgcttcaggccattctgtgtacagctgcagaagataatatttactg 552
Query: 301 ccagcacagcactctctccctaacggcagccatgggttcctgcgcaagctaccatgtttc 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 551 acagcacagcactctctccctaacggcagccatgggttcctgtgcaagctaccatgtttc 492
Query: 361 atagcc------gagcagcagtgtcagtgcgcgccactcaatcccactgtctgaagcatg 414
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atagccagtgccgagcagcagtgtcagtgcgcgccactcaatcccactgtctgaagcatg 432
Query: 415 ggaaggtggcagcaggaaggccggattcagagaaacctgcacacaccttgtagaacggct 474
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggaaggtggcagcaggaaggcgggattcagagaaacctgcacacaccttgtagaacggct 372
Query: 475 cccacacagaaataacccggttaaaccctaggagccgtcagtggccttcacttgggaagg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cccacacagaaataacccggttaaaccctaggagccgtcagtggccttcacttgggaagg 312
Query: 535 agatgtgtgtctaagaaggtgctgcttcccagacacagcctcaagaacggctctaactgc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agatgtgtgtctaagaaggtgctgcttcccagacacagcctcaagaacggctctaactgc 252
Query: 595 acactgctgacgagggaaggggagagtgccttacatctttctttccaaagt 645
||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 251 acactgctgacgagggaaggggaaagtgccttacatctttctttccaaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1051
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1041
Effective search space: 661035
Effective search space used: 661035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
