BAC Information

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BAC

Clone NameMSMg01-331H15
Chromosome12 (Build37)
Map Location 87,625,237 - 87,761,015
singlet/doubletdoublet
Overlap gene1700020O03Rik, LOC100042112, Esrrb
Upstream gene2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik
Downstream geneLOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331H15.T7 (MSMg01no331_h15.b1)MSMg01-331H15.TJ (MSMg01no331_h15.g1)
ACCAG447763AG447764
length729736
length of high quality
(start - end)
486 (45 - 530)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no331_h15.b1 PHD_FILE: MSMg01no331_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:23 2005CHROMAT_FILE: MSMg01no331_h15.g1 PHD_FILE: MSMg01no331_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,625,237 - 87,625,718)(87,760,772 - 87,761,015)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGGA
ATTCAGCTTCTTTCCTAAGCATGCAGCCACAAATCTCTGCCCTTCCCCCA
CCCGTAGAAAGTTTTGAGTTGAAATTGACTGAATTTAAAGATCTCAGTAC
TGCTGGAGGGGTGAAGAAAGGAAGGGACACCCAGGTCTTCCTTGCTCTGT
TTGCGTGTTTGTTTGAATGGTACAAAGGCTGGGAAAGGATCCTTGCAGGG
TCATTAGGTAGATCCTTCCAGGACGAGAGCACTGTTATTTTCTACTCTTT
GTCTCTACTTCCCTTCCCTCCCTGGCTTTACAGCAGGTAGAGCTTTAGCA
CGCAGCTGTTTCCTGGATCCTAGTGAGTACGCATGCAGGCCTTTTCTAAG
ACTGGTGCCCAGGCTCTACCGCACGCTGGATCAAACTAGCTGTATTAGGC
ACATAAATGTAGTTGGGGGGTGGGAATGGGAAAAAACCATTTTCTTCGAA
ACTTGAGAGTCAGTGGCTGTGAGAACTTTAATGCACCCAGGCTCTCACTG
AGACATGCTGCTCAAAGTGATTCTCCTCATCAGAGCCCCTGACATGTCCA
CCTTTGCCTTCAAAAGGTACACTATGTCTTTTAGAATATGTCAACTGGGG
CCACTGTAGATTCTGCTCACAGTCCGCATAGTTCATTGTGTTCCCTTAGC
CTTTCCCGTACTTCTTTTCCCTGGCATTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCCTTTCCCTGAGCACACTCAGGGCTTG
GCAGGGCTTTGAAAATGCACAGTTAATGACTCCTGTCGCAGTGGGGAATG
AAGCCTGCTCTTTGGCCTGTATGGCCATGGACACATGAAAGGATGCTGTA
GGTGACTCTGTACCCCTCCGCAGCCCATCACTACAGCTGCCATCTAATAG
ACTCCCCCCTCCCTCCCAGACAGCACCCACATCTTCTGCCAGTCACACTG
TTTCAAGTTGCTTAACACTTTTAGCAATCACGACTTTATTGATGTGAGAG
GTACCGCCCCTTCTCCATAGATTGGAAGTCTCATGAGAGGAGTGACTGCG
CGCGCACGCATGACGCCCACTGGATAATTCCAGCATCCTGTACCCAGCAA
TGCACTGTGAAGAGTGGCTCACGGACAAAGGTTACACAGCAAGGGTTTTT
TGGGGGGTGGGAAATCCTTTTCCCAGCATACAGATGTACGCCATACTGGC
TCGACGTGCCAGGTTTTGATAGCTACTGCCCGTACTCAGCCCCAAAACTT
ATGTTTATTAGGGGTCTGCATTGCTCTGTGATATTTCTTCCACACCTTTC
TCTTTTATAGTTCCATCTCCATGTTTTCTCCATCTTATTCCCTTTCTGTT
ATTTTGACTGTTTCCCCCTTTCTTTTCCCTCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_h15.b1 MSMg01no331_h15.b1 CHROMAT_FILE:
MSMg01no331_h15.b1 PHD_FILE: MSMg01no331_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:23 2005
         (486 letters)



>mm_chr12_87625033_87625918
          Length = 886

 Score =  901 bits (466), Expect = 0.0
 Identities = 478/482 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcttctttcctaagcatgcagccacaaatctctgcccttcccccacccgtaga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcttctttcttaagcatgcagccacaaatctctgcccttcccccacccgtaga 264

                                                                       
Query: 65  aagttttgagttgaaattgactgaatttaaagatctcagtactgctggaggggtgaagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagttttgagttgaaattgactgaatttaaagatctcagtactgctggaggggtgaagaa 324

                                                                       
Query: 125 aggaagggacacccaggtcttccttgctctgtttgcgtgtttgtttgaatggtacaaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaagggacacccaggtcttccttgctctgtttgcgtgtttgtttgaatggtacaaagg 384

                                                                       
Query: 185 ctgggaaaggatccttgcagggtcattaggtagatccttccaggacgagagcactgttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgggaaaggatccttgcagggtcattaggtagatccttccaggacgagagcactgttat 444

                                                                       
Query: 245 tttctactctttgtctctacttcccttccctccctggctttacagcaggtagagctttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctactctttgtctctacttcccttccctccctggctttacagcaggtagagctttag 504

                                                                       
Query: 305 cacgcagctgtttcctggatcctagtgagtacgcatgcaggccttttctaagactggtgc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 505 cacgcagctgtttcctggatcctagtgagtacgcatgcaggccttttctaagactggtac 564

                                                                       
Query: 365 ccaggctctaccgcacgctggatcaaactagctgtattaggcacataaatgtagttgggg 424
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaggctgtaccgcacgctggatcaaactagctgtattaggcacataaatgtagttgggg 624

                                                                       
Query: 425 ggtgggaatgggaaaaaaccattttcttcgaaacttgagagtcagtggctgtgagaactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 ggtgggaatgggaaaaaaccattttcttcgaaacttgagagtcagtggctgtgagaattt 684

             
Query: 485 ta 486
           ||
Sbjct: 685 ta 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no331_h15.g1 MSMg01no331_h15.g1 CHROMAT_FILE:
MSMg01no331_h15.g1 PHD_FILE: MSMg01no331_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:23 2005
         (244 letters)



>mm_chr12_87760572_87761215
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctttccctgagcacactcagggcttggcagggctttgaaaatgcacagttaatgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcctttccctgagcacactcagggcttggcagggctttgaaaatgcacagttaatgact 385

                                                                       
Query: 61  cctgtcgcagtggggaatgaagcctgctctttggcctgtatggccatggacacatgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgtcgcagtggggaatgaagcctgctctttggcctgtatggccatggacacatgaaag 325

                                                                       
Query: 121 gatgctgtaggtgactctgtacccctccgcagcccatcactacagctgccatctaataga 180
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 aatgctgtaggtgactctgtacccctccgcagcccatcactacaactgccatctaataga 265

                                                                       
Query: 181 ctcccccctccctcccagacagcacccacatcttctgccagtcacactgtttcaagttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcccccctccctcccagacagcacccacatcttctgccagtcacactgtttcaagttgc 205

               
Query: 241 ttaa 244
           ||||
Sbjct: 204 ttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)