BAC Information

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BAC

Clone NameMSMg01-332B14
Chromosome12 (Build37)
Map Location 103,011,566 - 103,011,884
singlet/doubletsinglet
Overlap geneFbln5
Upstream gene9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1
Downstream geneTrip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332B14.T7 (MSMg01no332_b14.b1)MSMg01-332B14.TJ (MSMg01no332_b14.g1)
ACCAG448221AG448222
length1,2981,288
length of high quality
(start - end)
554 (136 - 689)644 (137 - 780)
definitionCHROMAT_FILE: MSMg01no332_b14.b1 PHD_FILE: MSMg01no332_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:12 2005CHROMAT_FILE: MSMg01no332_b14.g1 PHD_FILE: MSMg01no332_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGCCAGCTTTGGNNNNCCCATTGGCGNANAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCGGTTGTTAGGGAGGGCTAAACTGACCCTTTCTTTTATN
AANTGANCCATCTTGTCCCTTTAACATCTCCAANTATATATCTATATCTA
TATCTATATATAAAATAACAGAGTACAGTCTTTAGTATGGTAAAAAGCAG
TAGAGTTTTGAAAAAAGACAAACTTGAAAGGTTTTGTTTCTAGGCTTGAA
TGCTGTATGTGTGTGTGTTTGTGTGTGTTTGTGTGTATGTGTGCAATAGA
CCCATGTTGAAGTCCTATGTGTCCTCCTGAGACGAGTGTGCTGTGCTTGG
TTTCTGCAGGACTTTTCTGTAGGCATGTTGTTTATGTTACATGTCACACA
AAGGCAGAGGTTTGGGGACTTGTCACCATGGCTTTCCAATAGCTCCTCAC
CTCCTCCTGGTCACATTCACTCACCATTCTCCTCAGCATTCACTCACCAT
TCTCCTCAGCATTCACTCACCATTCTCCTCAGCATTCACTCACCATTCTC
CTCAGCATTCACTCACCATTCTCCTCAGCATTCACTCACCATTCTCCTCA
GGGCAGAGACAAGAACAGAGACTCCCAAAGTTGTTCCCAGGGTATAACCA
CCATCCATCACTCTCTGCTGGGAAAATGTAAATATGTCCTGGCTGATGGT
GGCGTTATTTATTGTCCTAAGCTTGGAAGTAGGTTGGGACAGGAGTGGCC
ACTGGCCCAGCATTACTTCCTGGTTCCCCAGGGAGGCTGGGCTGTATGGG
CTGAGCTGAGGTAGAAGGGGGAGGCAAAGAGCAGGGGCAGGAGTTTGTCA
GGGTGGACTGAAGGTGCTTCTACCTCGAAACAAGACTCTTGGGGAGAATC
ATGTCCAGAGCAATGACGACTGGGTCCCCAGGGAACCAGCCCCCTTGGTT
ATTTGTGAGGTATAAGGGAGACTTAAGTTTTCTTAAGGTGGGTTGTTGGG
GAAAAAGGGGTGGCACTTAACCTGAGGAAACCCTCTCTATTTGGTTGAAA
AAAAAAAAAAATTATGTTGGGTTTCTTAGAACGCCGAAAAAAAAAAGGTT
ATTTTGGGAAAGTTGTGTTTGGGGTTCCACTTGGGGGCTGGAATTCTTAT
TCCCCCCCACCTCAAAAAGTATTTGGGGTGATTGATTTCCGCACACAGCG
GAAATGGGGTCTCCCCAAACTTTTTGGGGGAAAATTGTTTTTTTTNAGAA
TATCAGGTAGAAAANAAAATTTTTATNTCCCCTTATTGTTTTTTATTA
NCCGATCACTNNNNNNCCGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAACCCCCCAATACCGA
AGGGNTGAGAAGCACCTGACCAAATAATCCCCACCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCATACCAGTCAGAATGG
CTAGGTGACAGCAGATGCTGGCGAGAATGTTGAGAAAGAGGAACACTCCA
CCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGTGGTTCCTCAGAAAATTGGACATATTACTACCAGAGGATCCCGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTTGTAAGGACACATG
CTCTACTATGTTCATAGCAGTCTTATTTGTAATAGCCAGAAGCTGGAAAG
AACCCAGATGTCCCTCACAGAGGAATGGATACAGAAAATGTGATACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGGCAAATGGATGGAACTGGAGGGCATCATCCTGAGTGAGGTAACCCA
ATCACAAAAGAACTCACATGATATGTATTCACTGATAAGTGGATATTAGC
CCAGAAAATTAGAATACCCAATACACAAGATACAATTTGCAAAACACATC
AAACTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAG
AATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAG
CTGAGAACAAAGGATGGACCATCTAGAGACTGCCATACCCAGAAATCTAT
CCCATAATCAGCCCTCCAAACCTGACACCATTACCTACACCCAACAGATT
TTGTAAAAAGGGACCTGGTAAAGCTGTCTCTTGTGAGAATAAGCAGGGGC
CTGGCAAACCCAGAAATGGATGCTCACAGTCCGCTATGGAAGGACCACAG
GGCCCGAAATGAAGGACTTGGGAAAGTACCCCAGGAGCTAAGGGGTCTGC
ACCCCCATTGTTCCAAACACATATGAACTACCCCCTACCCCTGGACTCTC
GGTCCTCTAGTGGAATTGTATCCAAAAATGCCTTATCCCGCCCTCTGGGG
AAAAAAAGGGCCCTGGTTTTTCTAACTTTTATCGCCCTCCCCCAGGAAGG
CCCGTCTATAAATAGCAACGCTTGTCTACACTCAAATTCTTCCTCCCTTC
CTCAGCTCCCCTCTCTCTCTCTCCTATCCAATCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_b14.b1 MSMg01no332_b14.b1 CHROMAT_FILE:
MSMg01no332_b14.b1 PHD_FILE: MSMg01no332_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:12 2005
         (554 letters)



>mm_chr12_103011208_103012164
          Length = 957

 Score =  524 bits (271), Expect = e-153
 Identities = 312/341 (91%), Gaps = 25/341 (7%)
 Strand = Plus / Minus

                                                                       
Query: 14  tatatctatatataaaataacagagtacagtctttagtatggtaaaaagcagtagagttt 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatatctatatataaaataacagagtacagtctttagtatggtaaaaagcagtagagttt 618

                                                                       
Query: 74  tgaaaaaagacaaacttgaaaggttttgtttctaggcttgaatgctgtatgtgtgtgtgt 133
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   
Sbjct: 617 tgaaaaaagacaaacttgaaaggttttgtttccaggcttgaatgctgtatgtgtgtg--- 561

                                                                       
Query: 134 ttgtgtgtgtttgtgtgtatgtgtgcaatagacccatgttgaagtcctatgtgtcctcct 193
                              ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 -------------------tgtgtgcaataaacccatgttgaagtcctatgtgtcctcct 520

                                                                       
Query: 194 gagacgagtgtgctgtgcttggtttctgcaggacttttctgtaggcatgttgtttatgtt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gagacgagtgtgctgtgcttggtttctgcaggacttttctgtaggcatgttgtttatgtt 460

                                                                       
Query: 254 acatgtcacacaaaggcagaggtttggggacttgtcaccatggctttccaatag---ctc 310
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||   |||
Sbjct: 459 acatgtcacacaaaggcagaggcttgggtacttgtcaccatggctttccaatagctcctc 400

                                                    
Query: 311 ctcacctcctcctggtcacattcactcaccattctcctcag 351
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctcacctcctcctggtcacattcactcaccattctcctcag 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 957
Length adjustment: 10
Effective length of query: 544
Effective length of database: 947
Effective search space:   515168
Effective search space used:   515168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)