BAC Information

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BAC

Clone NameMSMg01-332B23
Chromosome12 (Build37)
Map Location 58,507,158 - 58,656,769
singlet/doubletdoublet
Overlap geneLOC100040044, Foxa1
Upstream geneE030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream gene4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332B23.T7 (MSMg01no332_b23.b1)MSMg01-332B23.TJ (MSMg01no332_b23.g1)
ACCAG448238AG448239
length1,2131,220
length of high quality
(start - end)
334 (418 - 751)445 (121 - 565)
definitionCHROMAT_FILE: MSMg01no332_b23.b1 PHD_FILE: MSMg01no332_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:14 2005CHROMAT_FILE: MSMg01no332_b23.g1 PHD_FILE: MSMg01no332_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,656,436 - 58,656,769)(58,507,158 - 58,507,602)
sequence
NCCACCCANNNNCATTCATTGGGCGCTAAGACTCACTAAGGGAGAGGATC
CGCGGATTCTTTGGNGGCCTGTCCCTGTTATGCCCGAGANTCANCAGAGG
NTNACAAACATTACCACTTAGCCGCACCAAGAAGAGCTAAACTGAAAGAG
AGGACAGAAGGACAAAGCCTCAGAAGTATCCATCGCCCCTCATTGGCCAA
ATCCAACTGGGAACCCAAAAGACAGGAAAACCACACAGCATCCCCCACTG
AAGTCAGCTTCCTGGGGCAACATCCAGAAGAAGCTCTGGCCAAATGTTCC
TATACCGTTATCCTCCCCACCCCACCCCACCCCATCCCACCCCCCATGGA
AATAAATGCATATATTGTGAGACAGTTTCTGCTCTCTAAGGATCACCCTA
GACTGGCTGCCTCTAGTCTTCTCCAACAACACTGGTGACCAAGTCTTCCC
TAGATCTTGAACTCTGAGGTCTTTCTAACAACAGACCTTAGCAAGCCAGC
CACTTCTTCCCCAGGGTGCCTCAGAAGTCTGGCGCCTGGTCTGATCTCAG
TGTTCTTAGGTAAGATAAAAATAGCAAGCATGGAGCAGAGGGAAACCTCT
GAGTAAAGAGACCCATTGAAAAGAAAAGATACATGTAAGCAGGTGTAGTT
GGCTGAGAATTAAAGGTTTATTTTTCTTGGAGGTAGGAGCTGACATCTAG
CATTCCCCGTCCACTGCAGTCCTCCAAAGGCTTTGATTAGATAGTTCCAA
GCATGGTAATGCAGTGGGGATTTTACTGAGTTTGAGGTCAGAACCATTCT
TTTTTTCTGAAGGTAGGTATGTAAGACAGTTGTACCGGCTTTGTAGCCTA
AACATTGAGCTTAGAGAAACAATGCCCGTTTGTGCTTAGAAAAACTAACA
GCTCTCCCCCCAGTAAGCTGTAAAAACCGAACCCCATTTTACCGGCGCTC
ACTGCCCAGAAACTTACCGTGGGCTGGGCCAGTGTCCTTCTATTCACCTC
CCCCCGTACCGACCCCAGAAAAAATAATAAACTTTGGAAAAGGGGGTGGT
TTTTCTTTTTCCCGGCAAAAGGGCAAAATATTTATCTGGCCCCCTTCCCG
ATGGCTCCAAAACACTAAAACCCCCAACCTTTTTTGAGGCCTGTTCCCCG
AAACCCCCTTTATCCACCCCAACAATTGTTGTGAAATTTTTGTGCCCCTT
ATCTCTGCACAGC
NACCCGAGGCGATGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTGCTCTGGAATTGTTCTTAGAACGTCCTTT
TGGCTCCTTTGAGTGCCCCATAGGAGCAAATTCACTTTAGATTATTCACT
AAAATGGTGACTGTTCTGAACTCTCAGAGTACAAATTGTTTGATGCTCTG
AGTAAAGCTGGCTATTGTATGAGAAGTTAGTCTGCCTTATTTTTAGGCCC
CACTCTTCCAGGTTCACAATGCCCACTAGAGTAATAAACAGATCATAAGT
AGCACTTGATTAAAATGTTCTAGATTTCTATACACATCGAGTCGTATTAA
ATGATTACTAGATCATATGTGAAACCGGGGAGCTTTCAGTAATTTTGTAC
ATGTCAGTAAACATGACTTTCAGAAGGATAATCAAGAAGTGTCAGGGGCC
AAACATGAAACTGATACCTACTTACCAATGAACATAAGCCCAGAATAGTA
TTTCCTGAAATAGTACTCATTAAATCTAAGAAATGAACAGATACGCCCTC
CACAGGATGACTTAACATATAGAGAAATGGTTAAAACACAAAACTTAGTT
TCTTAACACGAAATTTTAAAAGGAAGTTCCCACACACTAAAACTAAAAGG
CAATCTACACATCTGACAAGTGAATAATGTCTGAAATATGTAATTAACTC
CACTTATAAAAAACAATCTGAGAGTAAAATAGGCAATAGACACTTTGCAG
TGTAGGAATACAAGCATCCGCAGCCTGTTTCCCCACCACTTATCAGGTAT
ATGATGAGAATAGCAGTTATCCCAAAGACAGAACATGGTGCATATGAAGG
CTGTGAAGAACTCTTTAATTTCTTTTTTATTCCTCCCTTGACCAAGGTAT
CATTGAAAAAAATGGTTGTTCAGTTTTCCCGTGAATGTTGGCTTTTCCAT
TTATGTTGGTGGTCAAAAACACCCCTAATCCCTTGTTGAATCTGATAAGG
ATGCCTTGGGACCATTTCCAATATTTTTGGCAATATGTTGAAGCCCCGTT
TTTGTGACCCTCATTATGTTGGCCAATTTTTGGCAAAAGGTCCCCCTTCA
TCCTCCTTAAAAAACAAAGAATAACCCCTTTTGGCTTTAAGAAAAAAAAG
TCTCCTTAAAAAATTCCTCTAAACACCCCCCTTTGCTTTCTCAAACCTCT
TGTGTATACACCCCGCGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_b23.b1 MSMg01no332_b23.b1 CHROMAT_FILE:
MSMg01no332_b23.b1 PHD_FILE: MSMg01no332_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:14 2005
         (334 letters)



>mm_chr12_58656236_58656969
          Length = 734

 Score =  646 bits (334), Expect = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctccaacaacactggtgaccaagtcttccctagatcttgaactctgaggtctttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cttctccaacaacactggtgaccaagtcttccctagatcttgaactctgaggtctttcta 475

                                                                       
Query: 61  acaacagaccttagcaagccagccacttcttccccagggtgcctcagaagtctggcgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 acaacagaccttagcaagccagccacttcttccccagggtgcctcagaagtctggcgcct 415

                                                                       
Query: 121 ggtctgatctcagtgttcttaggtaagataaaaatagcaagcatggagcagagggaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggtctgatctcagtgttcttaggtaagataaaaatagcaagcatggagcagagggaaacc 355

                                                                       
Query: 181 tctgagtaaagagacccattgaaaagaaaagatacatgtaagcaggtgtagttggctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctgagtaaagagacccattgaaaagaaaagatacatgtaagcaggtgtagttggctgag 295

                                                                       
Query: 241 aattaaaggtttatttttcttggaggtaggagctgacatctagcattccccgtccactgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aattaaaggtttatttttcttggaggtaggagctgacatctagcattccccgtccactgc 235

                                             
Query: 301 agtcctccaaaggctttgattagatagttccaag 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 agtcctccaaaggctttgattagatagttccaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no332_b23.g1 MSMg01no332_b23.g1 CHROMAT_FILE:
MSMg01no332_b23.g1 PHD_FILE: MSMg01no332_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:15 2005
         (445 letters)



>mm_chr12_58506958_58507802
          Length = 845

 Score =  814 bits (421), Expect = 0.0
 Identities = 439/445 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggagcaaattcactttagattattcactaaaatggtgactgttctgaactctcagagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 taggagcaaattcactttagattattcactaaaatggtgactgttctgaactgtcagagt 260

                                                                       
Query: 61  acaaattgtttgatgctctgagtaaagctggctattgtatgagaagttagtctgccttat 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 acaaattgtttgatgctctgagtaaagctggctgttgtatgagaagttagtctgccttat 320

                                                                       
Query: 121 ttttaggccccactcttccaggttcacaatgcccactagagtaataaacagatcataagt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ttttaggccccactcttccaggttcacaacgcccactagagtaataaacagatcataagt 380

                                                                       
Query: 181 agcacttgattaaaatgttctagatttctatacacatcgagtcgtattaaatgattacta 240
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 381 agcacttgattaaaatgttctagatttctatacacatcgaatcgtagtaaatgattacta 440

                                                                       
Query: 241 gatcatatgtgaaaccggggagctttcagtaattttgtacatgtcagtaaacatgacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatcatatgtgaaaccggggagctttcagtaattttgtacatgtcagtaaacatgacttt 500

                                                                       
Query: 301 cagaaggataatcaagaagtgtcaggggccaaacatgaaactgatacctacttaccaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 cagaaggataatcaagaagtgtcaggggccaaacatgaaactgatgcctacttaccaatg 560

                                                                       
Query: 361 aacataagcccagaatagtatttcctgaaatagtactcattaaatctaagaaatgaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacataagcccagaatagtatttcctgaaatagtactcattaaatctaagaaatgaacag 620

                                    
Query: 421 atacgccctccacaggatgacttaa 445
           |||||||||||||||||||||||||
Sbjct: 621 atacgccctccacaggatgacttaa 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)