BAC Information

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BAC

Clone NameMSMg01-332D16
Chromosome12 (Build37)
Map Location 63,992,022 - 63,992,780
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
Downstream geneEG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332D16.T7 (MSMg01no332_d16.b1)MSMg01-332D16.TJ (MSMg01no332_d16.g1)
ACCAG448316AG448317
length1,3101,285
length of high quality
(start - end)
570 (94 - 663)759 (93 - 851)
definitionCHROMAT_FILE: MSMg01no332_d16.b1 PHD_FILE: MSMg01no332_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:27 2005CHROMAT_FILE: MSMg01no332_d16.g1 PHD_FILE: MSMg01no332_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNACCGAATCAGTANNNNACACTGGGCGCTATAGACTCCTATAGGGAGA
GGATCCGCGGAATTCAGGCCCATACCTAAACCTTACCAAAGCCATCTACA
GCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATC
CCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTT
CAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGA
TCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCA
GATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACT
CCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACT
CAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAA
GAAATTAGGGAAACAACACCCTTCTCAATAGTCACTAATAATATAAAATA
TCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACT
TCAAGTCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTT
GCCAAAAGCAATCTACAGATTCAATGCAAACCCCATCAAAATTCCAACTC
AATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAAC
AAAAAACCTAGGATAGCTAAAAGTCTTCTCAAGGATAAAAGAACTTCTGG
CGGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAA
AAACTGCATGGGACTGGTATAGAGACAGACAAGTAGACCCATGGAATAGA
ATTGAAGACCCCCAAATGAACCCCCCCCCCTATGGGCCCTTGATCTTCCA
CCAGGGAGGTAAAACCATCCCGCGGGAGAAAAGAAAGAATTTCCCCAATT
GGGGGGGGGCCCCCGGGTGGTTTCTGGTAAAAAAAGAAAACAACCCTACT
TATCCCCTTGCCTAGGGGAAAACAAAGGGAAAAGGAGATTCCCCTNACCC
CAAAACGAAATTTTTTAAAAAAAGGGGAAAACCTTTAAAATGGCTCCGGA
AAAATCCAACAAAACCAAGTTTGGTTGAATCGAAATTAAAGGGACCAGGA
ATCCCATCTTGTGGGAAAACCCCCTAAAAAAAACACCCCAGGAGAGATTT
CTGTTCCAAGGGGAAATCCTTTAAACTAAGGGGGTGAAAAACCCCAAAGG
GGAGAAAATA
NNNTTATTTTACNNNNNNATGATGCGAGGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATCTAATAATTAAAC
TCTTAAAATTCAGAGTTCAACTGATTACCTAACTGCACAGGTATCCTGGA
ATATAAAATGAGAATTGATCTCTAGATAAAGCCATACCTTAGAATCAGAT
GAAATATTTGTTAGAAAAAAATCAGAAATTTTTCATTCATAAGCCACAAA
GTTAAAACAGTAGTTTAAGTAGGTTGTAGGTTTTCCATTTGAATCAAAAG
GGAGATTAATTAAGTATACTTGTGTGGCTCCTTTGTCCTTAGCTTCTGTG
TTAAAAGCAAGATAAGGCAACAAAACAGATACAAACATTAACATTTTAAA
CTACAGAAGAAGAGAAACTGATTTACATAGATCATGAATATTAAGTTATT
TAAAAATGTGGAAAGAGAGGAGAAAGAGATTTATGGAAATAAAACCTCTT
TTAAAAAAGTAGTGTAGTTTTCTAACTAACTGAGAGAGCAAACTTAATTG
AAGTATGTTTATACTAGTCTGCAACATCTTCAGAAAAAAATCAAATAACC
ATTGCAAATCCTTTCCAAATTTGTTTATTGACCAACAACTTCATTAAAAA
TAAATACCCAAAAACATTTACAAAAATGAGTGTTCTGTATTGGACTGTAT
AGATGTAAAACACAAGCAAAATAAAAAACAGTTGTAGCATACACACACAC
AAACATATATACTATATATAGTTTGCATAATTGCTAANATGTGAAGACTA
TTAAATGAAGAACTAAGCTAAGAATTTCCAAGAGCACATTANACATTTAA
GACTTCATCCCAGGCATGCAAGGATGGTTCGATATATGAAAATCCATCAA
CATAATCCACTATATAAACAAACTCAAGAAATAAAGCCACATGATCACTT
ATTAGATGCTGAAGAAGCATTTGACAAATACAACACTTCTTCATGNTAAA
CTCTTAGAGAGATCAGAAACTCATGGCCCCTAATTAAACATAATAAAANG
CATATACCGGAATTCAACTGCCCACATTCAATTAATTAAAGAGAACTTGA
ACCATTCCCCTAAGGTCTGGAACAAAAAAAAGGGCCCCCTTCCCCCCCAC
TGTTCCAAACGACTTAAAGTTTTCGCCGAAAAATAACACCAAAAGGGAGT
TATTGTTATACACTCTAAAAAAAAAAAAGGGGGCCCCCCCTCTTAAAAAT
GAAAGAAACAAAACCCCCTCCTTATTTTCTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_d16.g1 MSMg01no332_d16.g1 CHROMAT_FILE:
MSMg01no332_d16.g1 PHD_FILE: MSMg01no332_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:28 2005
         (759 letters)



>mm_chr12_63991822_63992980
          Length = 1159

 Score = 1402 bits (725), Expect = 0.0
 Identities = 750/759 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaaactcttaaaattcagagttcaactgattacctaactgcacaggtatcctggaat 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 959 aattaaactcttaaaattcagagttcaactgaatacctaactgcacaggtatgctggaat 900

                                                                       
Query: 61  ataaaatgagaattgatctctagataaagccataccttagaatcagatgaaatatttgtt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 atgaaatgagaattgatctctagataaagccataccttagaatcagatgaaatatttgtt 840

                                                                       
Query: 121 agaaaaaaatcagaaatttttcattcataagccacaaagttaaaacagtagtttaagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 839 agaaaaaaatcagaaatttttcattcataagccacaaagttaaaaaagtagtttaagtag 780

                                                                       
Query: 181 gttgtaggttttccatttgaatcaaaagggagattaattaagtatacttgtgtggctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 779 gttgtaggttttccatttgaatcaaaagggagattaattaagtatactcctgtggctcct 720

                                                                       
Query: 241 ttgtccttagcttctgtgttaaaagcaagataaggcaacaaaacagatacaaacattaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttgtccttagcttctgtgttaaaagcaagataaggcaacaaaacagatacaaacattaac 660

                                                                       
Query: 301 attttaaactacagaagaagagaaactgatttacatagatcatgaatattaagttattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 attttaaactacagaagaagagaaactgatttacatagatcatgaatattaagttattta 600

                                                                       
Query: 361 aaaatgtggaaagagaggagaaagagatttatggaaataaaacctcttttaaaaaagtag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaaatgtggaaagagaggagaaagagatttatggaaataaaacctcttttaaaaaagtag 540

                                                                       
Query: 421 tgtagttttctaactaactgagagagcaaacttaattgaagtatgtttatactagtctgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgtagttttctaactaactgagagagcaaacttaattgaagtatgtttatactagtctgc 480

                                                                       
Query: 481 aacatcttcagaaaaaaatcaaataaccattgcaaatcctttccaaatttgtttattgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aacatcttcagaaaaaaatcaaataaccattgcaaatcctttccaaatttgtttattgac 420

                                                                       
Query: 541 caacaacttcattaaaaataaatacccaaaaacatttacaaaaatgagtgttctgtattg 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 419 caacaacttcattaaaaataaatacacaaaaacatttacaaaaatgagtgttctgtattg 360

                                                                       
Query: 601 gactgtatagatgtaaaacacaagcaaaataaaaaacagttgtagcatacacacacacaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gactgtatagatgtaaaacacaagcaaaataaaaaacagttgtagcatacacacacacaa 300

                                                                       
Query: 661 acatatatactatatatagtttgcataattgctaanatgtgaagactattaaatgaagaa 720
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 299 acatatatactatatatagtttgcataattgctaaaatgtgaagactattaaatgaagaa 240

                                                  
Query: 721 ctaagctaagaatttccaagagcacattanacatttaag 759
           ||||||||||||||||||||||||||||| |||||||||
Sbjct: 239 ctaagctaagaatttccaagagcacattaaacatttaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 759
Length of database: 1159
Length adjustment: 10
Effective length of query: 749
Effective length of database: 1149
Effective search space:   860601
Effective search space used:   860601
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)