Query= MSMg01no332_f04.b1 MSMg01no332_f04.b1 CHROMAT_FILE:
MSMg01no332_f04.b1 PHD_FILE: MSMg01no332_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:39 2005
(624 letters)
>mm_chr12_59643111_59644132
Length = 1022
Score = 1187 bits (614), Expect = 0.0
Identities = 621/624 (99%), Gaps = 2/624 (0%)
Strand = Plus / Plus
Query: 1 ctttctacctgtatatatgaaagatgataatgaagttctaatcccttgattccaatgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctacctgtatatatgaaagatgataatgaagttctaatcccttgattccaatgaga 260
Query: 61 aacattgcatagcaatactgttgatgttctgatggtatcttttgaagtcatggagaatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattgcatagcaatactgttgatgttctgatggtatcttttgaagtcatggagaatta 320
Query: 121 gaaatggtttagaagataggggttgtccttaatctgtattgcagaatgtgcatcattaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatggtttagaagataggggttgtccttaatctgtattgcagaatgtgcatcattaat 380
Query: 181 tcagtaagaaatactgatttcgccagtcctctcactttgcacaagaatgttgtctcaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtaagaaatactgatttcgccagtcctctcactttgcacaagaatgttgtctcaaac 440
Query: 241 accactgagtactcgcaattcatgtagcaatatatcattattactagagagttctttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accactgagtactcgcaattcatgtagcaatatatcattattactagagagttctttaaa 500
Query: 301 tttaagatgctataaaagttaattaacagtgtgcacacttttaccaaagtcaaagaattg 360
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 tttaagatgctataaaagttaattaa--gtgtgcacacttttaccaaagtcaaagaattg 558
Query: 361 tatttatatcattatgtattcactagttatattacctggcatgattaaaactatccttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tatttatatcattatgtattcactagttatattacctggcatgattaaaactatccttaa 618
Query: 421 ctaattttaaataaagcctaatggaaacaattaaagattaatgtcatttcaataatttcc 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctaattttaaataaaacctaatggaaacaattaaagattaatgtcatttcaataatttcc 678
Query: 481 taaaattacaataattaatttaaagttgtaatgttttccaactttgtaataagttactgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 taaaattacaataattaatttaaagttgtaatgttttccaactttgtaataagttactgt 738
Query: 541 gttcctacatttgtcattgtatgtccaacatacaaagaaataagcctaggctatttccac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gttcctacatttgtcattgtatgtccaacatacaaagaaataagcctaggctatttccac 798
Query: 601 atcctgagcatgccacaaagaatt 624
||||||||||||||||||||||||
Sbjct: 799 atcctgagcatgccacaaagaatt 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_f04.g1 MSMg01no332_f04.g1 CHROMAT_FILE:
MSMg01no332_f04.g1 PHD_FILE: MSMg01no332_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:39 2005
(645 letters)
>mm_chr12_59818321_59819365
Length = 1045
Score = 1139 bits (589), Expect = 0.0
Identities = 628/651 (96%), Gaps = 20/651 (3%)
Strand = Plus / Minus
Query: 1 ccttatccactgaacttgcccttcgcccataactcaccgattattgagtgtgtaatttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ccttatccactgaacttgcccttcgcccataactcaccgattattgagtgtgtaatttag 658
Query: 61 taaggaggagatatggattaagtttttttatgttaatgattttacttaatggccaaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taaggaggagatatggattaagtttttttatgttaatgattttacttaatggccaaaatt 598
Query: 121 gaatatgtcaagagaaggaagattttgtttgtttgtttttcaagtttttcagctccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaatatgtcaagagaaggaagattttgtttgtttgtttttcaagtttttcagctccaaga 538
Query: 181 agcatgaacaaatccaacaaaggaagcttcaagaaagacttctggtcttccttgaaagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agcatgaacaaatccaacaaaggaagcttcaagaaagacttctggtcttccttgaaagcc 478
Query: 241 gaatcctcttcccataactaattgaaatttga---ttttttt---taagaactgggtcaa 294
|||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 477 gaatcctcttcccataactaattgaaatttgagcc------taactaagaactgggtcaa 424
Query: 295 ttccacagaaaacattaaaaacttgagaagataaataaaccaaaacttgcagcattcttg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttccacagaaaacattaaaaacttgagaagataaataaaccaaaacttgcagcattcttg 364
Query: 355 gatcacggctttctaagtaaagcatcattttcagggaggtccagaggcttctcatactcg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gatcacggctttctaagtaaagcatcattttcagggaggtccagaggcttctcatactcg 304
Query: 415 gtcctggctttgttgattgcctctcgctgatacagaccaagtcatagcaggcaagatcta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtcctggctttgttgattgcctctcgctgatacagaccaagtcatagcaggcaagatcta 244
Query: 475 ttcagaagtactcacatgtctttgaaaatagcatatttctatctctatctatctatctat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttcagaagtactcacatgtctttgaaaatagcatatttctatctctatctatctatctat 184
Query: 535 ctatctatctatctatctatctatctatctatctatctatcaatctatctacctacctac 594
||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||
Sbjct: 183 ctatctatctatctatctatcaatctatctatctaccta-c-------ctacctacctac 132
Query: 595 ctacctacctacttatctgaaaggcaaggccagaaaccagggaatagcacc 645
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctacctacctacctatctgaaaggcaaggccagaaaccagggaatagcacc 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 12
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
