Query= MSMg01no332_g07.b1 MSMg01no332_g07.b1 CHROMAT_FILE:
MSMg01no332_g07.b1 PHD_FILE: MSMg01no332_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:47 2005
(572 letters)
>mm_chr12_31387142_31388113
Length = 972
Score = 1098 bits (568), Expect = 0.0
Identities = 571/572 (99%)
Strand = Plus / Plus
Query: 1 tattcagcttacacttccacattgctgttcatcaccaaagaaagtcaggacagaaactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcagcttacacttccacattgctgttcatcaccaaagaaagtcaggacagaaactca 260
Query: 61 cacaaggcaggaacttggaggcaagagctgatggggagaccatggagaggtgctgcttac 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cacaaggcaggaacttggaggcaagagctgatggggaggccatggagaggtgctgcttac 320
Query: 121 tggcttgcctcccctggcttactcagccggctttcttatagaactcagggctattagccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcttgcctcccctggcttactcagccggctttcttatagaactcagggctattagccc 380
Query: 181 aggaatggcaccacccacaatggactaggcccttgatcactaattgagaaaatgcattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaatggcaccacccacaatggactaggcccttgatcactaattgagaaaatgcattac 440
Query: 241 aactggatctcatggaagcatttcctccagggaagctcctttctctgtgatatctccagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactggatctcatggaagcatttcctccagggaagctcctttctctgtgatatctccagc 500
Query: 301 ttttgtcaagttgacacacaaacccagccagcacatgaccccagtaaaactgtcctttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgtcaagttgacacacaaacccagccagcacatgaccccagtaaaactgtcctttaa 560
Query: 361 acataaaaaggtaagaaaggttttctgaaatggaaatagatggatttggtgtctagagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acataaaaaggtaagaaaggttttctgaaatggaaatagatggatttggtgtctagagat 620
Query: 421 atttccagtgttgagtgcttcagagagaaatagaacaatatatgtctgaatctcatatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttccagtgttgagtgcttcagagagaaatagaacaatatatgtctgaatctcatatta 680
Query: 481 tgtgaagtaagtctcttaaaggggggaattcgtgaatgggaattttatgcagtggaacta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgaagtaagtctcttaaaggggggaattcgtgaatgggaattttatgcagtggaacta 740
Query: 541 ttctgcctgatactggatggtggatatatggt 572
||||||||||||||||||||||||||||||||
Sbjct: 741 ttctgcctgatactggatggtggatatatggt 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_g07.g1 MSMg01no332_g07.g1 CHROMAT_FILE:
MSMg01no332_g07.g1 PHD_FILE: MSMg01no332_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:47 2005
(721 letters)
>mm_chr12_31548832_31549952
Length = 1121
Score = 1328 bits (687), Expect = 0.0
Identities = 712/727 (97%), Gaps = 12/727 (1%)
Strand = Plus / Minus
Query: 1 gccaggtatcttatgcaccaacagtactagaatttttcatcctcctctggtggcttagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gccaggtatcttatgcaccaacagtactagaatttttcatcctcctctggtggcttagca 674
Query: 61 agtgacaggaaaagcacccagatgtaaacaacacactgagccagcaggaaggctggaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agtgacaggaaaagcacccagatgtaaacaacacactgagccagcaggaaggctggaaag 614
Query: 121 gggccagccaggccctcccagacaacattgcatggtgtaaaggacctggcacaatccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gggccagccaggccctcccagacaacattgcatggtgtaaaggacctggcacaatccagc 554
Query: 181 ccctcaccctcctggccaacacaactgatactgtacatgctaattacaagaggcctgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccctcaccctcctggccaacacaactgatactgtacatgctaattacaagaggcctgtga 494
Query: 241 aaatgtgagattccactctagatcggacttgacacatcaaatatc------ttttttaag 294
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 493 aaatgtgagattccactctagatcggacttgacacatcaaatatcccggca------aag 440
Query: 295 ttgtttcccatgggcaccaagcaagggactgagctattaatcaaaggtaggccaggctgt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttgtttcccatgggcaccaagcaagggactgagctattaatcaaaggtaggccaggctgt 380
Query: 355 cacacctactttgctctgaagttcccatgcactcgaggaagcacagctgaggagaaatcc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacacctactttgctctgaagttcccatgcactcgaggaagcacagctgaggagaaatcc 320
Query: 415 agacttttcaaaagcattgctactccttgaattaggcaagatggggtatagtgccttgga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agacttttcaaaagcattgctactccttgaattaggcaagatggggtatagtgccttgga 260
Query: 475 catttattgaagtccagtcggcaagcacatcacatgctggctaacggaattccttctcct 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 catttattgaagtccagtcggcaagcacatcacatgctggctaacggaattccttctcct 200
Query: 535 tctccttctccttctccttctccttctccttctccttctccttctccttctccttctcct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tctccttctccttctccttctccttctccttctccttctccttctccttctccttctcct 140
Query: 595 tctccttctccttctccttctccttctccttctccttctccttctccttctccttcccct 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 139 tctccttctccttctccttctccttctccttctccttctccttctccttctccttctcct 80
Query: 655 tctccttctccttctccttctccttctccttctccttctccttctccttctccttctcct 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 79 tctccttctccttctccttctccttctccttctccttctccttctccttctcctcctcct 20
Query: 715 tctcctc 721
||||||
Sbjct: 19 cctcctc 13
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 267
Number of extensions: 56
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
