BAC Information

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BAC

Clone NameMSMg01-333B07
Chromosome12 (Build37)
Map Location 40,393,572 - 40,393,911
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333B07.T7 (MSMg01no333_b07.b1)MSMg01-333B07.TJ (MSMg01no333_b07.g1)
ACCAG448934AG448935
length735726
length of high quality
(start - end)
376 (45 - 420)344 (72 - 415)
definitionCHROMAT_FILE: MSMg01no333_b07.b1 PHD_FILE: MSMg01no333_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:10 2005CHROMAT_FILE: MSMg01no333_b07.g1 PHD_FILE: MSMg01no333_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGAGCTCCGCGGA
ATTCAAGAAGTTGTTCACCAACAGCCCAAATAACTCAATTTAAAAGTGGG
GTACAGAGGTAAACAGAATTCTCCTGTGAATTTCATTGCTGTTAATAGCT
GAGTAGTACTCTATTGTGTAAATATATCCATTCCTCTGTTGAAGGACATC
TGGGTTCTTTCCAGCTTCTTGCTGTTATGAATAAGGTTGCTATGAACATA
GTGGAACATGTGTACTTATTAGAAGTTGGAGCATCTTCTGGGTATAAGCC
CAGGAGAGGTATTGCTAGATCCTCAGGTAAAAGTGGATGCTCCTGGTTCC
AAGACTCCACCGAAAGAAAGTAGTCTGCACAGGTGAGAGTGTGCACTACA
GAAGCTAACAGCTTCTGGGACAGGCGGCAGCCACAGAGATTCTGAGGCAG
CACCCTTTTTGGGCTCCAGACATCAGGGCACCTTCCCGGCCAGAGAACAG
GTATCTGCATGGCCCGGGAGGGCTTTCCCTCAGCATCAGCAGGAGTCATC
TTGGTTCCGGGACTCTGCCAAAAGTAGTCTGCACAGGTGAGAGTGTGGAC
TACAGAAGCTAACAGCTTCTGTGACAGGCCAAAGCAACCCAGCTTCTAGG
AAAGGTCCTGTTTTGGGCCTTCATCTTCGGCCAGAGGGGAGGTCCGAATG
CCAGATATCTGTGCACCTTCCCTGTAAGAGGAGAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCCTTGCAGATGATTTGCTTCTTTTATG
AAAATTAAGGTTTCATCATAATGTTCTGATACATAAAACTTACAGAAACT
TCAAGACACATTCAAAATTTCCATTTAGCTCTGGTTATATTCCTGTGACA
AATGCTTGCCAATATGAATCCTTAATTCTTTAACAATCGCAGCACATTGC
CCGTACATCAAGTACCTAGATGCCATCAATAAGCTGGAATTAAGGGTATT
TCAGAAGATGGAAAGTTCTGCTTTATCTCCTCCCAGGGCCCCACCCCCTG
TTGCCCATTTAATAGAGAAACAGGAGCATGAGAACAGCATGTATGAGGTA
CATAGCACAGGTTGCACACCCCCGGGCACATATCAACCATGCGCTTACAT
TTGAAACACATCTATTGTCATACATTTTACTCGCTGAAGATTCTGCCATT
GTGTAAACGTCGTAGCCCTATAGTAGGAACAACAATATGAACTTACCAGT
AACCCCAAACCTCCCAGCGACTATACCAACTGAAAACTACACATGAAGTG
ATCCATGGCTCCACCCATCTATGTAGTATAGGATAGTCTACCCAGTCATC
ATTGGTAGGAGATGCCTCTGTCCTGTGAAGGGTCCATGCCCCAGCGTCAG
GTAATGCCAGGTTCCAGTATTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_b07.g1 MSMg01no333_b07.g1 CHROMAT_FILE:
MSMg01no333_b07.g1 PHD_FILE: MSMg01no333_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:10 2005
         (344 letters)



>mm_chr12_40393372_40394115
          Length = 744

 Score =  611 bits (316), Expect = e-179
 Identities = 334/340 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccttgcagatgatttgcttcttttatgaaaattaaggtttcatcataatgttctgata 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 540 ctccttgcagatgatttgcttcttttgtgaaaattaaggtttcatcataatgttctgata 481

                                                                       
Query: 61  cataaaacttacagaaacttcaagacacattcaaaatttccatttagctctggttatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cataaaacttacagaaacttcaagacacattcaaaatttccatttagctctggttatatt 421

                                                                       
Query: 121 cctgtgacaaatgcttgccaatatgaatccttaattctttaacaatcgcagcacattgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 420 cctgtgacaaatgcttgccaatatgaatccttaattctttaacaatcacagcacattgcc 361

                                                                       
Query: 181 cgtacatcaagtacctagatgccatcaataagctggaattaagggtatttcagaagatgg 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatacatcaagtacctagatgccatcaataagctggaattaagggtatttcagaagatgg 301

                                                                       
Query: 241 aaagttctgctttatctcctcccagggccccaccccctgttgcccatttaatagagaaac 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 300 aaagttctgctttatctcctcccaggcccccaccccctgttgcccatttaatagagaaac 241

                                                   
Query: 301 aggagcatgagaacagcatgtatgaggtacatagcacagg 340
           |||||||||||||||||||||||| |||||||||||||||
Sbjct: 240 aggagcatgagaacagcatgtatgtggtacatagcacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)