Query= MSMg01no333_d20.b1 MSMg01no333_d20.b1 CHROMAT_FILE:
MSMg01no333_d20.b1 PHD_FILE: MSMg01no333_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:22 2005
(514 letters)
>mm_chr12_85284751_85285664
Length = 914
Score = 953 bits (493), Expect = 0.0
Identities = 509/515 (98%), Gaps = 3/515 (0%)
Strand = Plus / Minus
Query: 1 ctcaatctcatagagatctatctacctctatctcccaagtgctaggaaaagtgtgca-cc 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 877 ctcaatctcatagagatctatctacctctatctcccaagtgctaggaaaagtgtgcaccc 818
Query: 60 ccatacccgatcctttttaacttttgggggtttttgagacagtgttttctcagctgtctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ccatacccgatcctttttaacttttgggggtttttgagacagtgttttctcagctgtctg 758
Query: 120 gactggcactgttgaccttgctctgtaatccaggcacatttttgtcttggcttccctaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gactggcactgttgaccttgctctgtaatccaggcacatttttgtcttggcttccctaat 698
Query: 180 agctgggattacaaatctgtgcctccatgcctggctttctacttgatttcttcctgtgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agctgggattacaaatctgtgcctccatgcctggctttctacttgatttcttcctgtgca 638
Query: 240 ctgtttacacaggattaaagaacactaagtgacttcatgtatttctctaaatccctaaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctgtttacacaggattaaagaacactaagtgacttcatgtatttctctaaatccctaaaa 578
Query: 300 ggatgtatttacatcctaaatacatgtcagacctataaatcttactacaacacaagaagt 359
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 577 ggatgtatttacatcctaaatacatgtcagacctataaatcttactagaatagaagaagt 518
Query: 360 gtgagactcagaattttttacaagatgtacaaattgatctctgagacacaaagtagaatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtgagactcagaattttttacaagatgtacaaattgatctctgagacacaaagtagaatc 458
Query: 420 ttgtttatttaagaaagaaacatcccaggtgacgtgtgtgtgtgtgtgtgtgtgtgtgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttgtttatttaagaaagaaacatcccaggtgacgtgtgtgtgtgtgtgtgtgtgtgtgtg 398
Query: 480 tgtgtgtgtatgtgtgtgtatgtcttcatgcccag 514
||||||||| ||||||||||||||||||||||||
Sbjct: 397 tgtgtgtgt--gtgtgtgtatgtcttcatgcccag 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_d20.g1 MSMg01no333_d20.g1 CHROMAT_FILE:
MSMg01no333_d20.g1 PHD_FILE: MSMg01no333_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:22 2005
(527 letters)
>mm_chr12_85123725_85124651
Length = 927
Score = 957 bits (495), Expect = 0.0
Identities = 519/527 (98%)
Strand = Plus / Plus
Query: 1 caggcagggtggcagaaagagggccgacccatctcctctaacaggtgcgtgtaaaaccat 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 caggcagggtggcagaaagagggccggcccatctcctctaacaggtgcgtgtaaaaccat 260
Query: 61 ggtcccatctcctgcgtgagaggtacactgtaagatactggtgagcaatcgctaccttcc 120
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcccatctcctgcgtgagagatgcactgtaagatactggtgagcaatcgctaccttcc 320
Query: 121 acctcttgtatgtgcaatgtcctctcttgtagagaagcccttttggcatgccttagaaat 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 acctcttgtatgtgcaatgtcctctcttgtagagaagcccttctggcatgccttagaaat 380
Query: 181 gtgagagggctcagagtgctatggggctatatggtcttctctggtagcatgggagctgga 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagagggctcagagtgttatggggctatatggtcttctctggtagcatgggagctgga 440
Query: 241 agactcttactgccctcaggagcccagaaatcacatctctcctctctccactcaggtacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactcttactgccctcaggagcccagaaatcacatctctcctctctccactcaggtacc 500
Query: 301 agctccaggcagatggctccctcatcatcagccgcttgaggccggagcacgccggcatct 360
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 501 agctccaggcagatggctccctcatcatcagccgcttgaggccggaggatgctggcatct 560
Query: 361 atagctgtggcagccacaggccaggccatgagccccaggagatacagcttcgagtcacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagctgtggcagccacaggccaggccatgagccccaggagatacagcttcgagtcacag 620
Query: 421 gtttctgtcccatcccgttcattccacctcccagagtctcacaaaacaagagttgggact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttctgtcccatcccgttcattccacctcccagagtctcacaaaacaagagttgggact 680
Query: 481 gaagaagggagggagggaggggctgtgcaggggctgacccaccctag 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagaagggagggagggaggggctgtgcaggggctgacccaccctag 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
