Query= MSMg01no333_h20.b1 MSMg01no333_h20.b1 CHROMAT_FILE:
MSMg01no333_h20.b1 PHD_FILE: MSMg01no333_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:41 2005
(334 letters)
>mm_chr12_48687880_48688613
Length = 734
Score = 630 bits (326), Expect = 0.0
Identities = 332/334 (99%)
Strand = Plus / Minus
Query: 1 ttcatcaaaagttttatcaaaatattagtactaaaagaaagatctgactatactagaaac 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 534 ttcatcaaaagttttatcaaaatatcagtactaaaagaaagatctgactatactagaaac 475
Query: 61 tatgctaagtgcaaaaaccaaaatgttgactaagacagacacatttaatatcatataact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tatgctaagtgcaaaaaccaaaatgttgactaagacagacacatttaatatcatataact 415
Query: 121 taagtcatactgatgatagaaaactacaaatgcatttctaaaagatggaaatcacacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 taagtcatactgatgatagaaaactacaaatgcatttctaaaagatggaaatcacacctt 355
Query: 181 tatgtaacatcaatgaatggaatatttggattaggaatgacttatttttttctgagaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatgtaacatcaatgaatggaatatttggattaggaatgacttatttttttctgagaaat 295
Query: 241 attgcatagatttatgaattttaagggggtgatttatttcctgggaccataggattggaa 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 294 attgcatagatttatgaattttaagggggtgatttctttcctgggaccataggattggaa 235
Query: 301 caataggtaatacaaatgaaagaaggaaggtagg 334
||||||||||||||||||||||||||||||||||
Sbjct: 234 caataggtaatacaaatgaaagaaggaaggtagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_h20.g1 MSMg01no333_h20.g1 CHROMAT_FILE:
MSMg01no333_h20.g1 PHD_FILE: MSMg01no333_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:41 2005
(581 letters)
>mm_chr12_48502037_48503017
Length = 981
Score = 1087 bits (562), Expect = 0.0
Identities = 576/586 (98%), Gaps = 10/586 (1%)
Strand = Plus / Plus
Query: 1 tttggaaaatggcaacctaaagtgtgaattggtttctccattttatgtgcacatataatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggaaaatggcaacctaaagtgtgaattggtttctccattttatgtgcacatataatg 260
Query: 61 atggttcatatgagcagaaagactaccagatctgggtaatcaggtcccgggcaggagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggttcatatgagcagaaagactaccagatctgggtaatcaggtcccgggcaggagacc 320
Query: 121 atcttctatgatgaaccattaggcacaaatgacctgcctctgcagactaggataatcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttctatgatgaaccattaggcacaaatgacctgcctctgcagactaggataatcatc 380
Query: 181 ctgacagcattccctggaccagaaacagacatgctgatgttgcttttcatcctgtctgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacagcattccctggaccagaaacagacatgctgatgttgcttttcatcctgtctgca 440
Query: 241 tatcattgttttt-----cttgcctcaccttccatatcccaggcaatgatttctcattca 295
|||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcattg-----gcccacttgcctcaccttccatatcccaggcaatgatttctcattca 495
Query: 296 ttgtggggctttttttcctgcaactacatcaaaacttagtgtgatccaccctgccttcca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgtggggctttttttcctgcaactacatcaaaacttagtgtgatccaccctgccttcca 555
Query: 356 atcctaatattagtgtggagatttagttattagtaccaatccccacaacaaagcaatata 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atcctaatattagtgtggagatttagttattagtaccaatccccacaacaaagcaatata 615
Query: 416 acaatttaattccttgatcaattaacaagacagataagagtgtttggaataacaataaaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acaatttaattccttgatcaattaacaagacagataagagtgtttggaataacaataaaa 675
Query: 476 tatgtgctaaattggagataatttcagcagaaatttaattataaactaaaatgccctgct 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tatgtgctaaattggagataatttcagcagaaatttaattataaactaaaatgccctgct 735
Query: 536 tactgaaaatcctttgaccagggttattgataggctcataatggtt 581
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tactgaaaatcctttgaccagggttattgataggctcataatggtt 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
