BAC Information

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BAC

Clone NameMSMg01-333H22
Chromosome12 (Build37)
Map Location 37,861,077 - 37,861,416
singlet/doubletsinglet
Overlap geneMeox2
Upstream geneBzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneA530016O06Rik, LOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333H22.T7 (MSMg01no333_h22.b1)MSMg01-333H22.TJ (MSMg01no333_h22.g1)
ACCAG449234AG449235
length719712
length of high quality
(start - end)
254 (75 - 328)352 (78 - 429)
definitionCHROMAT_FILE: MSMg01no333_h22.b1 PHD_FILE: MSMg01no333_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:41 2005CHROMAT_FILE: MSMg01no333_h22.g1 PHD_FILE: MSMg01no333_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNGACTGAGCGG
AATTCATGAAATTCTTACGCAAATGTATGGAGCTAAAAAATATCCTGAGT
GAGGGAACCTAGTCACAAAAGAACTCACATTGTATGTACTCACTGATAAG
TGGATATTATCCCAGAATCTCAGAATACCCAAGATACAATTCACAGACCA
CATAAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGATGCTTCAGTCCATC
TTAGAAGGGGGATCAAAATACCCACATGCGGTAGATGGTGGAAGGGGTTT
GGGAGGAAGAAAGTGGGGGGAGGGGAAATGTTTNAGNNTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNTGTTTTTTTT
TTTTTNNNNTGGTNNNNCCCCCCCCCCCCCCCCCNTTTTTTTTTTNTTTG
GTTTTNNTTTGCCTCTTTTCCTCTCCTGTCCCTTNNCNCCTTTTTGTCCT
CTGTTNCTCTNTTTNTCNCTTTGGCTTTGGGGTCTGCCTTTTTTCTTTTG
TTGCTTTTCNCCCCTTTTCCTCCCTGTGTTGCTTTTTCTTTGTTTCGCTC
TTTTCCCCCTTTCTGTTCCCGTCGTTCGGGTTCTCGGGGNGCGCCTTCCC
CGNCCNNNTTGTTTTTTTTTGNNNTTNNNCCCTTTTGGNGTCTTTCCCTC
CTTCCTTCGCCCTTTTTTG
NCCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATCAAATGGATAGAAATTAA
AGGAGAGATACTTAACTAGAACAGAAGCTTTAAAAATACTGTTCTCAATA
ATTGACCAAAACTTGTTGATAGAAAACAAGAAAAGATTTGAAAAAGGGGG
GGGGCTATAAACCAAGAAGTTATGGATTTTATCCTAAAAGAGAAAAACAA
TGGAGTTACAATAGGAAAATAGTAGATAAAATAAATGAAATAAAATGTTA
ATATTCACTAGTAGGATGCATATTTCACAAAAATAACAGTGATTTTTCAA
ATCCCTTATATTATATTATACCTACATATTATACAGACATCAAAATGTCA
AGAAGTACTGTGAACTGCTGCACACAAACGCCAAATGCAAGATACATCCA
TCAATGTGTTAAAAATGCATATAATACAACTCATGTAGTATAAAAAAGAT
ATTGACACTGGTAATCTATTANGAAAATGAATTTCAGGNTGGTTTTAATT
TCTTTTAGTGCTTCTCCAGCAATAATATTCCTGTGTTGGAAAATCCTTTG
TTAAGCTCTATACCCCCTTTTTAAAACCGGGGATTTGGGTCCCTGAATCC
TAACTTCTTGAATTCCTTGGAAAAAGGGGGGATTAACCCCTTTATCCGTT
GGAAGAATTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_h22.g1 MSMg01no333_h22.g1 CHROMAT_FILE:
MSMg01no333_h22.g1 PHD_FILE: MSMg01no333_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:41 2005
         (352 letters)



>mm_chr12_37860877_37861627
          Length = 751

 Score =  625 bits (323), Expect = 0.0
 Identities = 340/351 (96%), Gaps = 11/351 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatcaaatggatagaaattaaaggagagatacttaactagaacagaagctttaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatcaaatggatagaaattaaaggagagatacttaactagaacagaagctttaaaaat 260

                                                                       
Query: 61  actgttctcaataattgaccaaaacttgttgatagaaaacaagaaaagatttgaaaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgttctcaataattgaccaaaacttgttgatagaaaacaagaaaagatttgaaaaagg 320

                                                                       
Query: 121 gggggggctataaaccaagaagttatggattttatcctaaaagagaaaaacaatggagtt 180
           |||||| |||||||||||||         |||||||||||||||||||||||||||||||
Sbjct: 321 gggggg-ctataaaccaaga---------ttttatcctaaaagagaaaaacaatggagtt 370

                                                                       
Query: 181 acaataggaaaatagtagataaaataaatgaaataaaatgttaatattcactagtaggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acaataggaaaatagtagataaaataaatgaaataaaatgttaatattcactagtaggat 430

                                                                       
Query: 241 gcatatttcacaaaaataacagtgatttttcaaatcccttatattatattatacctacat 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 431 gcatatttcacaaaaataacagtgatttt-caaatcccttatattatattatacctacat 489

                                                              
Query: 301 attatacagacatcaaaatgtcaagaagtactgtgaactgctgcacacaaa 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attatacagacatcaaaatgtcaagaagtactgtgaactgctgcacacaaa 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 751
Length adjustment: 9
Effective length of query: 343
Effective length of database: 742
Effective search space:   254506
Effective search space used:   254506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)