Query= MSMg01no333_j09.b1 MSMg01no333_j09.b1 CHROMAT_FILE:
MSMg01no333_j09.b1 PHD_FILE: MSMg01no333_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:48 2005
(372 letters)
>mm_chr12_43359549_43360320
Length = 772
Score = 661 bits (342), Expect = 0.0
Identities = 360/366 (98%), Gaps = 2/366 (0%)
Strand = Plus / Plus
Query: 7 tctctgttttgc-tgaaa-ataccagcctggatgcctctctgctcttgcctacatgatag 64
|||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctctgttttgcctgtaccataccagcctggatgcctctctgctcttgcctacatgatag 264
Query: 65 tggactgaacctctgaacctgtaagccagctccaatgaaatgttgtctttctaagagttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggactgaacctctgaacctgtaagccagctccaatgaaatgttgtctttctaagagttg 324
Query: 125 ccttggtcatggtgtctgttcacagcagtaaaaccctaagaaaacactgtatgccaaacc 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 ccttggtcatggtgtctgttcacagcagcaaaaccctaagaaaacactgtatgccaaacc 384
Query: 185 tggggccagtcacttcattctgcagttagcttaaaaaaaatgaaggcaaataatacagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggggccagtcacttcattctgcagttagcttaaaaaaaatgaaggcaaataatacagtg 444
Query: 245 gaatttattgggaaccagtaatatattttagtaaacagttcaaacatttccactcttcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaatttattgggaaccagtaatatattttagtaaacagttcaaacatttccactcttcat 504
Query: 305 ctcaaaatcattatgtttggtttctgggtttggaaaactgcaatttgatgacaactcaaa 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcaaaatcactatgtttggtttctgggtttggaaaactgcaatttgatgacaactcaaa 564
Query: 365 cattta 370
||||||
Sbjct: 565 cattta 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_j09.g1 MSMg01no333_j09.g1 CHROMAT_FILE:
MSMg01no333_j09.g1 PHD_FILE: MSMg01no333_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:48 2005
(340 letters)
>mm_chr12_43532470_43533209
Length = 740
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%)
Strand = Plus / Minus
Query: 1 caggagcagggcagggcgagggtataagggactttcgggatagcatttgaaatgtaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caggagcagggcagggcgagggtataagggactttcgggatagcatttgaaatgtaaaag 453
Query: 61 aagaaaatatataataataaaaaaaccctataggatctgaccaccactgatgactcaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagaaaatatataataataaaaaaaccctataggatctgaccaccactgatgactcaatc 393
Query: 121 attcaaataatttatcctactggaaggtgttcaaactaccactgtattgctttattagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 attcaaataatttatcctactggaaggtgttcaaactaccactgtattgctttattagaa 333
Query: 181 gtgtagtgacagagtccaggtcatgtcatgcagaatacttgaaactgaattcccttaaga 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtgtagttacagagtccaggtcatgtcatgcagaatacttgaaactgaattcccttaaga 273
Query: 241 aaaccatgtaaagtgtccacactttggtcttcgttcttcttgagtttcatgtgttttgca 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaccatgtaaagtatccacactttggtcttcgttcttcttgagtttcatgtgttttgca 213
Query: 301 aattgtatcttgtatcttgggtattctaagtttctgggct 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aattgtatcttgtatcttgggtattctaagtttctgggct 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
