Query= MSMg01no334_h21.b1 MSMg01no334_h21.b1 CHROMAT_FILE:
MSMg01no334_h21.b1 PHD_FILE: MSMg01no334_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:56 2005
(320 letters)
>mm_chr12_101624417_101625135
Length = 719
Score = 327 bits (169), Expect = 6e-94
Identities = 216/247 (87%), Gaps = 27/247 (10%)
Strand = Plus / Minus
Query: 96 acatgtcccggaggtgtgtgcatgagtagggggctgacatgccccggaggtgtgtgcatg 155
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acatgccccggaggtgtgtgcatgagtagggggctgacatgccccggaggtgtgtgcatg 395
Query: 156 agtagggggctggggtgaggtggggagagtctttgggttctctccaacagtctgtagtgt 215
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 394 agta-ggggctggggtgaggtggggagagtctttgggttctctccaacaatctgtagtgt 336
Query: 216 tgagcggcagaggatact-------------------tgccaaaaccatggcttactgct 256
|||||||||||||||||| |||||||||||||||||||||||
Sbjct: 335 tgagcggcagaggatacttgccaaaaccatggcttactgccaaaaccatggcttactgct 276
Query: 257 gctatttggtggaagcct---gtttttgctttcatagctgagtgacagggggcatgtcgt 313
|||||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct: 275 gctatttggtggaagcctgggg----tgctttcatagctgagtgacagggggcatgtcat 220
Query: 314 taagtaa 320
| |||||
Sbjct: 219 ttagtaa 213
Score = 275 bits (142), Expect = 3e-78
Identities = 145/146 (99%)
Strand = Plus / Minus
Query: 22 aaaaacatgtcatgactcactcgtgtgcattgttcatggttaaagttaagtcttgactcc 81
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 708 aaaaacatgtcatgactcactcgtgtgcattgttcatggttaaagttaagtcttgaatcc 649
Query: 82 cttttgagatataaacatgtcccggaggtgtgtgcatgagtagggggctgacatgccccg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 cttttgagatataaacatgtcccggaggtgtgtgcatgagtagggggctgacatgccccg 589
Query: 142 gaggtgtgtgcatgagtagggggctg 167
||||||||||||||||||||||||||
Sbjct: 588 gaggtgtgtgcatgagtagggggctg 563
Score = 132 bits (68), Expect = 4e-35
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 96 acatgtcccggaggtgtgtgcatgagtagggggctgacatgccccggaggtgtgtgcatg 155
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 562 acatgtcccggaggtgtgtgcatgagtagggggctgacatgccctggaggtgtgtgcatg 503
Query: 156 agtagggggctg 167
||||||||||||
Sbjct: 502 agtagggggctg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_h21.g1 MSMg01no334_h21.g1 CHROMAT_FILE:
MSMg01no334_h21.g1 PHD_FILE: MSMg01no334_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:56 2005
(495 letters)
>mm_chr12_101422852_101423747
Length = 896
Score = 861 bits (445), Expect = 0.0
Identities = 486/505 (96%), Gaps = 10/505 (1%)
Strand = Plus / Plus
Query: 1 agccactaatatagaagtattagttctgtaggttttcttatacagaaactttcacgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccactaatatagaagtattagttctgtaggttttcttatacagaaactttcacgcagc 260
Query: 61 ataagctatatagcaaagccttatcttaaatagactaaaaatagtaatttaacagg-aaa 119
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 261 ataagctatatagcaaagccttatcttaaatagactaaaaatagcaatttaacaggaaaa 320
Query: 120 aaaattttaagaaccttaaagcccaaaactatgtgcagggactgagaaagaaaaccagca 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatttaagaaccttaaagcccaaaactatgtgcagggactgagaaagaaaaccagca 380
Query: 180 tacagaagttacctttgactctagaaatgcatttatttcctcgtgcccatcaaactccag 239
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagaagttacgtttgactctagaaatgcatttatttcctcgtgcccatcaaactccag 440
Query: 240 aaaggaacccataccactctgtctttgttttcactctgttcatcctttctttc------- 292
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggaacccaaaccactctgtctttgttttcactctgttcatcctttctttctttcttt 500
Query: 293 --ttttttttttaaataaaggttttatttattttatgtatgtgagtacaccgtcactgtc 350
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ttttttttttttaaataaaggttttatttattttatgtatgtgagtacacagtcactgtc 560
Query: 351 ctcagactcaccagaagagggcatcagatcccattgctgtggttgtgagccaccatgtgg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagactcaccagaagagggcatcagatcccattgctgtggttgtgagccaccatgtgg 620
Query: 411 ttgttgagaattgaactcaggacctctggaagagcagtcagtgctcttaaccactgagcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgttgagaattgaactcaggacctctggaagagcagtcagtgctcttaaccactgagcc 680
Query: 471 atctctctggcccctcatcctccca 495
||||||| |||| |||||||||||
Sbjct: 681 atctctccagcccttcatcctccca 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 896
Length adjustment: 10
Effective length of query: 485
Effective length of database: 886
Effective search space: 429710
Effective search space used: 429710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
