Query= MSMg01no334_j21.b1 MSMg01no334_j21.b1 CHROMAT_FILE:
MSMg01no334_j21.b1 PHD_FILE: MSMg01no334_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:06 2005
(618 letters)
>mm_chr12_73568466_73569483
Length = 1018
Score = 990 bits (512), Expect = 0.0
Identities = 524/528 (99%)
Strand = Plus / Minus
Query: 91 cacacacgtgcgtgtgcacacgcatgggtttatgcacaggaaagcattgcctgtggagtt 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 cacacacgtgcgtgtgcacacgcatgggtttatgcacaggaaagcattgcctgtggagtt 959
Query: 151 taaaagagtttattggatcccctgaaactggagttacaaggtagttatgaaccacccagt 210
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 958 taaaagagtttattggatcccttgaaactggagttacaaggtagttatgaaccacccagt 899
Query: 211 gtgggtgctggaactgactctggtcctctgcaagagctgccattgagtgctcttacacac 270
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 898 gtgggtgctggaactgactctggtcctctgcaagagctgccagtgagtgctcttacacac 839
Query: 271 gtaagccatctctccaggcctgatactttattttcactctatgcaagatataaaatgtga 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ataagccatctctccaggcctgatactttattttcactctatgcaagatataaaatgtga 779
Query: 331 gtcaggctagcctgttttagaaatgcattttagaaggattaagtagatggtaaatatgag 390
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 778 gtcaggctagcctgttttagaaatgcattttagaaggactaagtagatggtaaatatgag 719
Query: 391 gtttttctaataactgggatggaaaagaatgatctgaaaagtatcagttattttcaagta 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gtttttctaataactgggatggaaaagaatgatctgaaaagtatcagttattttcaagta 659
Query: 451 aagaggccttgatttagcaaccagatcgtgtttctgatatttcactacctgaagccatgc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagaggccttgatttagcaaccagatcgtgtttctgatatttcactacctgaagccatgc 599
Query: 511 acagttgacagcttgccatgaaccatcccagcagaactgtggcctggatcctggcatgct 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 acagttgacagcttgccatgaaccatcccagcagaactgtggcctggatcctggcatgct 539
Query: 571 attctcaaagaaccagtaagtgcttgagtgctgctagccggaggcacc 618
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 attctcaaagaaccagtaagtgcttgagtgctgctagccggaggcacc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_j21.g1 MSMg01no334_j21.g1 CHROMAT_FILE:
MSMg01no334_j21.g1 PHD_FILE: MSMg01no334_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:06 2005
(546 letters)
>mm_chr12_73392059_73393004
Length = 946
Score = 924 bits (478), Expect = 0.0
Identities = 524/546 (95%), Gaps = 13/546 (2%)
Strand = Plus / Plus
Query: 1 aaggaacatatgacgacgaattaagtggccaattatcacttaaacatccctcccacatgg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 aaggaacatatgacgacgaattaagtggccaattatcacttaaacagccctgccacatgg 260
Query: 61 atgttgcaaaaatcattcaaagaccttcttttacatcacaggccaagaaaatgaacaggg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 atgttgcaaaaatcattcaaagaccttcttttacatcacaggctaagaaaatgaacaggg 320
Query: 121 acgttcaaattgtggaaggttttgctgaggtgaaaagttagaagctggatatttctattt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgttcaaattgtggaaggttttgctgaggtgaaaagttagaagctggatatttctattc 380
Query: 181 ccactacaaccactggatggcaacagacattagcagtctgttaacctacacacacacaca 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ccactacaaccactggatggcaacagacatttgcagtctgttaacctacacacacacaca 440
Query: 241 cacacacacacttttttcacacacacacacacacatacacacacacacacacaccttata 300
||||||||||| ||||||||||||||||| ||||||| |||| | ||| |
Sbjct: 441 cacacacacac-------acacacacacacacacacacacacagacaccc-cac-----a 487
Query: 301 tccactttaattgatttcctctggaacttttgatggagattagaatctcctacagatgtc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 tccactttaattgatttcctctggaacttttgatggagattagaatctcctagagatgtc 547
Query: 361 agggacaagtaagtaacagtgaattcaaggtcaacgagtgtggttttgaaacacatacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agggacaagtaagtaacagtgaattcaaggtcaacgagtgtggttttgaaacacatacat 607
Query: 421 tttgtttttgccaagtttttgtattcaaggaaatctcttacaagatttagtactcagcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttgtttttgccaagtttttgtattcaaggaaatctcttacaagatttagtactcagcca 667
Query: 481 agagttatgaaaacccaaagtgcctactggaagggaagcattaagccagtgtcaggagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agagttatgaaaacccaaagtgcctactggaagggaagcattaagccagtgtcaggagcc 727
Query: 541 ataatg 546
||||||
Sbjct: 728 ataatg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
