BAC Information

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BAC

Clone NameMSMg01-334P16
Chromosome12 (Build37)
Map Location 45,967,709 - 45,967,899
singlet/doubletsinglet
Overlap geneStxbp6
Upstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334P16.T7 (MSMg01no334_p16.b1)MSMg01-334P16.TJ (MSMg01no334_p16.g1)
ACCAG450343AG450344
length797742
length of high quality
(start - end)
222 (44 - 265)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no334_p16.b1 PHD_FILE: MSMg01no334_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:35 2005CHROMAT_FILE: MSMg01no334_p16.g1 PHD_FILE: MSMg01no334_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTGAGGTCCGCGGAA
TTCCAACTGTTTACAGACATTTTAGCTGGAAACAAAAAAACAATTTTTTT
TTCAGATTCATTCTAATGCCTGCAAATAGCTGAAGGTGGATGTCCTATTA
GCAGTGGTCATCGATGTCATTGTTTTGTTTTGTTTTGTCTTGTCTTGTCT
TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACATG
ATTTCTCTGTGTATCCCTGCCTGTCCTGCAATTGATTCTGTATACCAGGC
TGGACTTGAACTCTTTTTTTTTCCTGCCCCTGCCTTCCAAGTGCCGGGAT
TACATTGAATTTTATCAACGCCCACCCTCCCCACTGTCTTCTTTTATTAT
CATTTACATTTATGCCGACTCCCACTTCATATACATACTATGCGTCACAT
TTCCTCTATTTCCACCCCCCCTTATCTCTGTTTTTTCTTTTTTTTATACC
TTCCTTCCCCTCATTTTTTTCTTCTTCCACCTTCCTGTTCCTTATATATC
TTTTTCGCTCTTACCCCCTTTCCCTCACTCCTCCCCTCTTTTTTTTTTTT
TTCCTTCCCCCCTTTCCTCTTTCTTCACTTCCCCTTATTCCCCTTTTTTT
CCTTTTTCCCTTTCTTCCTCTCTCCCTCTTTTCCTCCTTTCTCTTTTACC
CGTTTCCCCTCTTTTTTCCTTCCTCTCTTTATCTTTCCCCCCTCCCCCCC
CCCTCTTCTTTTCACTCATTTTTATCCCTCTTTCCTCCCCCCCCTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAAATTGGTTATCTAATACCAAATG
GCCAGCCCTGCACACACACACACACACACACACACACACACACACACACA
CTTGAACAATTAAAGAAATAGAAGCCATGAATTTGAGAGAAAGGAAGGAG
AATGCATGGGAAAGGTTAGAGGGAGAAAAAAGGAAAGGGAAGAAATAATG
TAATTGTATTTTAATATCAATGATAAAAAGGGATTTTCCTGCAAAAGTGT
AGATTTTTTTAAAGCAAAATAATATAAGTTACATACCAAAAGGAGCTATT
AACTATAGACTAATTCTGTAACAGAAGTGTGTTTAGAAAATGTGTGGTGA
GACCAAAATGTTCCACCTATGCTTTGGAGAGTGTTATCACTCAGCATTCA
CTTAACTGAAGATGGATCAGGTTAAGGGTCTACCCAGAAACTTCCAGGCA
TTTTTTTTATGTGTGCAGAATCATGTAAGCCTTCCTATACTGAACATGCA
GTGCTGTAGCTTTTTCCCTTTTTCATGTTTCTGACAGCTAAGAACAAAAT
GCATGGTTAGGAACAGTAGTCCTACAAAACAATTCTTTACAATATTTACG
CTTGTTAGCTATGCAACATGTCGAACTCATATTTTTGTATAATCTGAAAA
TACCTTCACTCAACGTGTTTTACGCTAGCGACCAGACCAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_p16.b1 MSMg01no334_p16.b1 CHROMAT_FILE:
MSMg01no334_p16.b1 PHD_FILE: MSMg01no334_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:35 2005
         (222 letters)



>mm_chr12_45967574_45968195
          Length = 622

 Score =  335 bits (173), Expect = 2e-96
 Identities = 189/197 (95%), Gaps = 7/197 (3%)
 Strand = Plus / Minus

                                                                       
Query: 25  cattttagctggaaacaaaaaaacaatttttttttcagattcattctaatgcctgcaaat 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cattttagctggaaacaaaaaaacaatttttttttcagattcattctaatgcctgcaaat 267

                                                                       
Query: 85  agctgaaggtggatgtcctattagcagtggtcatcgatgtcattgttttgttttgttttg 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agctgaaggtggatgtcctattagcagtggtcatcgatgtcattgttttgttttgttttg 207

                                                                       
Query: 145 tcttgtcttgtcttgttttgttttgttttgttttgttttgttttgttttgtttttgagac 204
           ||||||||||||     |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcttgtcttgtc-----ttgtcttgttttgttttgttttgttttgttttgtttttgagac 152

                            
Query: 205 atga-tttctctgtgta 220
           | || ||||||||||||
Sbjct: 151 a-gagtttctctgtgta 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)