BAC Information

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BAC

Clone NameMSMg01-335B12
Chromosome12 (Build37)
Map Location 106,533,571 - 106,533,963
singlet/doubletsinglet
Overlap genenone
Upstream geneEG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1
Downstream geneLOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335B12.T7 (MSMg01no335_b12.b1)MSMg01-335B12.TJ (MSMg01no335_b12.g1)
ACCAG450431AG450432
length716720
length of high quality
(start - end)
609 (62 - 670)393 (110 - 502)
definitionCHROMAT_FILE: MSMg01no335_b12.b1 PHD_FILE: MSMg01no335_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:44 2005CHROMAT_FILE: MSMg01no335_b12.g1 PHD_FILE: MSMg01no335_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
CAATGACAGTCCAAGAGTCCAGGTGGGTTGACTTTATTGGTCTTCCTATG
AAGTTCCAATCCCCTTTGAGGCCCAAAATCCTTCCTCCTATTCTTCCATA
AGAGTCCCTAAGCTCCATCGATTTTATGGCTGTGGTTGTCTGTATCTGTC
TGAAACAGCTGCTGGGAGGAGCCTCTCAGAGGACAACATTCCCCCATCTG
CAGGAATAGCAGAGTATCATTAGTAGTATTAGGGATTGATGCTTGTTCAT
GGGATGAGTCTCAAGTTGTGCCAGTTAATGGTTGGTTGTTCCCTCAGCCT
CTGCTCTGTCCCTCATGCCTGCATTTCTTGTAGACAGGATACATTTTGGG
TTGAAAGTTGTGTGGGAGTGGTGATGTCCCTGTTGTCCCACTGGGGTTCC
TGCTTTGCTATAGGAGGTAGCCTCTTCCAATCCTGTAACTCCAAAGGAGT
GAGTCACAGCTAAGGTCACACCATTGATTCTTGGGTGCCTCCTTTAACTC
AAGTCTCTGTCTTGTCCTGGAAGTGTCTCTCACCTCCTCACCCCTGTCAG
TTGCTGATTTCCATTCTTTTCCATGCCCACTTAGCCATCTCTCTTGTCCC
TCCCCACACCTGATTTTGAAGTCACTCATTACCTCCATCTCTTCCTCTGC
CCGTTTCCTCCCTGTC
AATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATAGACAGAAAGTCAGATATGGGAGG
GAAAGCCACACAAATGGGGAGGTGTATGGTAGGAGTGCCAGGGACAGTCA
TCAAGTGGAAGGGAAGCAGAGATGGGCTCTACCATGGCCACGAGGAGGAA
GCAACCCTACCAACAGCTGGATAATGGACATCTGGCCTCCAGCCCCGTGA
AAACCACATTTCTGTCACCTCAAGTGTTTGGGTTTGGGTCATGGGGAATC
AATTCCAATGGGGACCTTCTGAGAAAGAGTGGTTCCCCCAGTATCCTAGA
ACCGTGACGCCAATCAGAGGACCCGGTGCTCAGATGTCCTGGCCACAAGC
CCAACTCGAATGATAGCATGTGTTCACCAAGTTTCACAAAGTCCTGCGCT
GATGGGAGGACCTGGAGCCACAAGTGGGAGACAGCAGAGATCTTCCCAGC
GTGTCCGGAGGGACCCACAGGGGTCCTGTGCTGAGAAGTGTAAGGAGCCT
GACCCGGTGGCTCCTGGGAGCTCGGGGTTTTGATTCACCACAGGGGACCG
CTGTCTCCCTTACAAGGGACATGCCCGTGGCTCATCTCCCAGACTGTATT
TACTATGTTTTGTTACATCTGCTCTGGTTACGTTGGTGTTTTTGTTTCAT
TCCCTATATTTCTCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_b12.g1 MSMg01no335_b12.g1 CHROMAT_FILE:
MSMg01no335_b12.g1 PHD_FILE: MSMg01no335_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:44 2005
         (393 letters)



>mm_chr12_106533371_106534163
          Length = 793

 Score =  714 bits (369), Expect = 0.0
 Identities = 387/393 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaatggggaggtgtatggtaggagtgccagggacagtcatcaagtggaagggaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acaaatggggaggtgtatggtaggagtgccagggacagtcatcaagtggaagggaagcag 534

                                                                       
Query: 61  agatgggctctaccatggccacgaggaggaagcaaccctaccaacagctggataatggac 120
           |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agacaggctctaccacggccacgaggaggaagcaaccctaccaacagctggataatggac 474

                                                                       
Query: 121 atctggcctccagccccgtgaaaaccacatttctgtcacctcaagtgtttgggtttgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atctggcctccagccccgtgaaaaccacatttctgtcacctcaagtgtttgggtttgggt 414

                                                                       
Query: 181 catggggaatcaattccaatggggaccttctgagaaagagtggttcccccagtatcctag 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 413 catggggaatcaattccaatggggaccctctgagaaagagtggttcccccagtatcctag 354

                                                                       
Query: 241 aaccgtgacgccaatcagaggacccggtgctcagatgtcctggccacaagcccaactcga 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aaccgtgacaccaatcagaggacccggtgctcagatgtcctggccacaagcccaactcga 294

                                                                       
Query: 301 atgatagcatgtgttcaccaagtttcacaaagtcctgcgctgatgggaggacctggagcc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 atgatagcatgtgttcaccaagtttcacaaagtcctgtgctgatgggaggacctggagcc 234

                                            
Query: 361 acaagtgggagacagcagagatcttcccagcgt 393
           |||||||||||||||||||||||||||||||||
Sbjct: 233 acaagtgggagacagcagagatcttcccagcgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)