Query= MSMg01no335_f17.b1 MSMg01no335_f17.b1 CHROMAT_FILE:
MSMg01no335_f17.b1 PHD_FILE: MSMg01no335_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:05 2005
(404 letters)
>mm_chr12_90790666_90791463
Length = 798
Score = 712 bits (368), Expect = 0.0
Identities = 390/400 (97%), Gaps = 6/400 (1%)
Strand = Plus / Plus
Query: 5 gaattctcaagacttcactactacattttcttgcaccgtattctcataattttgtgagag 64
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagacatcagtactacattttcttgcaccgtattctcataattttgtgagag 264
Query: 65 cttgtgcacactgaaacgcaaagctccggttccttactataccttttgctcacagttgac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgtgcacactgaaacgcaaagctccggttccttactataccttttgctcacagttgac 324
Query: 125 ctgggtcatctttgctgtcagttgcttgtattgggcttaagctttcaggtggaatgatgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgggtcatctttgctgtcagttgcttgtattgggcttaagctttcaggtggaatgatgc 384
Query: 185 taatacaggtcagttctgttccatccaggggattatgtcccatcaggcagccttggcatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taatacaggtcagttctgttccatccaggggattatgtcccatcaggcagccttggcatt 444
Query: 245 cccctttgttaaaggacaacagaaggcaagataaagtgtttgatgattggattaaggggg 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccctttgttaaagaacaacagaaggcaagataaagtgtttgatgattggattaaggggg 504
Query: 305 atgaacttataaattgtggtcatctaccctcccccccaccccccctgagaaggtaggcat 364
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 505 atgaacttataaattgtggtcatctaccc----cctcacccccc--gagaaggtaggcat 558
Query: 365 aaggtaaagtatgatttgcttctgtgttaatcctatgatt 404
||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggtaaagtatgatttgcttctgtgttaatcctatgatt 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 798
Length adjustment: 9
Effective length of query: 395
Effective length of database: 789
Effective search space: 311655
Effective search space used: 311655
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_f17.g1 MSMg01no335_f17.g1 CHROMAT_FILE:
MSMg01no335_f17.g1 PHD_FILE: MSMg01no335_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:05 2005
(531 letters)
>mm_chr12_90944839_90945770
Length = 932
Score = 996 bits (515), Expect = 0.0
Identities = 527/531 (99%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 1 agtaatgtttatgactaccgcatttgatccactagacaattttaagtcaaaatgaaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agtaatgtttatgactaccgcatttgatccactagacaattttaagtcaaaatgaaggaa 672
Query: 61 atgataaatcatatcaaataatgcatataggaaatgactaacattaagcttcctcttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atgataaatcatatcaaataatgcatataggaaatgactaacattaagcttcctcttgat 612
Query: 121 ttatctttacttattcagaaaactggtacttagagatctttaaaaaaaaaaacacttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttatctttacttattcagaaaactggtacttagagatctttaaaaaaaaaaacacttaaa 552
Query: 181 acttagccagactcatttgttttttgttttttttt-aaaatggggatagggagaataaac 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 551 acttagccagactcatttgttttttgtttttttttaaaaatggggatagggagaataaac 492
Query: 240 ctcgggttttgtcaccttatattattaaatggctgaaacttaataacatcttttgcttat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctcgggttttgtcaccttatattattaaatggctgaaacttaataacatcttttgcttat 432
Query: 300 attgcatttatctttaatattgtcttttatttatgtgaagtgagactgacttcccattta 359
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 431 attgcatttatctttaatatcgtcttttatttatgcgaagtgagactgacttcccattta 372
Query: 360 ccttaatgttatgtatgttgcttttcaaacaaatgtatttcttttaaagcaaaataaatc 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccttaatgttatgtattttgcttttcaaacaaatgtatttcttttaaagcaaaataaatc 312
Query: 420 aacttaagcattgacaaaattcactgaaggtagtgttcaaatgacaagggtaatacatac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aacttaagcattgacaaaattcactgaaggtagtgttcaaatgacaagggtaatacatac 252
Query: 480 catgcaacccttttccatgcttctatttgagggaggacttgaattctgtca 530
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 catgcaacccttttccatgcttctatttgagggaggacttgaattctgtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
