BAC Information

Click to search

BAC

Clone NameMSMg01-335I15
Chromosome12 (Build37)
Map Location 65,336,226 - 65,336,459
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302
Downstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335I15.T7 (MSMg01no335_i15.b1)MSMg01-335I15.TJ (MSMg01no335_i15.g1)
ACCAG450771AG450772
length735764
length of high quality
(start - end)
57 (159 - 215)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no335_i15.b1 PHD_FILE: MSMg01no335_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:20 2005CHROMAT_FILE: MSMg01no335_i15.g1 PHD_FILE: MSMg01no335_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCACTATATTGCGAGAATCCGCGGAATTCTCATTTCT
TGCCGAAAATGATTGGGTGTTATAAAGGCAGTAAGCATTGCTGATTTAAA
CCAGATGCACAAACTCAGTATTTTGACAAAAGTGTCAGAGATCTGATCAG
AGATAGATAGAAGTGCCCTGGGCTTGCCAGGCAGCTCATAATACAAATTT
TCAAAACATAGTAATTATCAAAATGGACCAATCCCTGTTTCTACCAAAGA
GCTGTGGCTCAACAAAGGCATGGAACATATTTTTAAGTGACTTTCAAGAA
GAAATGTATGTAGAACAATCATTATTTAAGATCTTTACATTTAGATTCAC
TTCCCAAAAAATGCTTCATTGGGAGAGGATCATTTGTCTTTAAGACACAT
CCAATAAAACCCATGTTGTGAGGGAAAATGAATCCATTAAATTTGTAGGA
TTTGAGTTTTACGGCTAATGTTTCCACAACATTATTAGAGCTGAATGCGC
CCCAAGTGCCCATATTGAAGAAGCAGCCTAAATGACTAATTCCCTGTACT
GAGGCCCACGATGGTTCTTATGGATCAGGTGCCTTACGCAAATAGGTGCT
ACCCCAAATGCTATACAACTGTGACCAATCCTCCGACCACAATCATTTTG
CTTCCCACCTCTCTTACGGCCCTTCCCCTCGTACAAAATGTTCCCTATTT
ATACCTTTATCTTTTCTAAAATATTCCACTCCCTT
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATTACCTCCAAAATACTTAATATTTT
GAACATACAAGTGATTAGTGTTTAGCAAAAATTGATTTGAATAGTTGTGA
GATGTTGGCTCCCTTGAGATTGTCTGTATACTTTGCAAAATTATCTTAGG
AGTTGATTAGCTAAATCCAGATCACTGTTATTTGGGTAGGTATCTCTCTT
TCTTATAAGGTGACTTCATGTCTATATGTGCTGGATGGTAAAGGTTAGCT
CTAAATATTCCCCATTGTTTCCTTCTTCCGGTATTCGAACTCTTGTGTAA
CTCCTCCACTTTTCTTGAATACCTGTTAATAAAGAGAATGTGTCCCAACG
TATCCAATATTTTACTTGTGGGAAGTCATAATAATCTCCCCAGCTCATCT
TCTCCACTTGCAACAGCATTTGAAATGATTTTAATATAACCTTTTTGCTT
GGGTTGTGATATATTCTATACGGACATTCCCTTGTCTTTTAATTGTTTCC
CCTGTTTTTCCTCCCCCCATAACATCCGTATTTTCTTCTCCTCCTTGATA
AAGCCCTTGTTATATTGGTTCCCCCCTATTATTCCTCTTATTACCTTGAC
CAATAATTGTTCGCTTTTTATATCACCCTCGACCTCCTTTTTTTTTTCTA
ATATTTTCTCCCTCTTTCGCCCCTCCTCTTAACTCTTTTATTATTATTTC
GCCCCGTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_i15.g1 MSMg01no335_i15.g1 CHROMAT_FILE:
MSMg01no335_i15.g1 PHD_FILE: MSMg01no335_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:20 2005
         (242 letters)



>mm_chr12_65336026_65336667
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattacctccaaaatacttaatattttgaacatacaagtgattagtgtttagcaaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tattacctccaaaatacttaatattttgaacatacaagtgattagtgtttagcaaaaatt 375

                                                                       
Query: 61  gatttgaatagttgtgagatgttggctcccttgagattgtctgtatactttgcaaaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gatttgaatagttgtgagatgttggctcccttgagattgtctgtatactttgcaaaatta 315

                                                                       
Query: 121 tcttaggagttgattagctaaatccagatcactgttatttgggtaggtatctctctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcttaggagttgattagctaaatccagatcactgttatttgggtaggtatctctctttct 255

                                                                 
Query: 181 tataaggtgacttcatgtctatatgtgctggatggtaaaggttagctctaaata 234
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 254 tataaggtgacttcatgtctatatgtgctggatggtaaaggttagttctaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)