Query= MSMg01no336_f01.b1 MSMg01no336_f01.b1 CHROMAT_FILE:
MSMg01no336_f01.b1 PHD_FILE: MSMg01no336_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:21 2005
(666 letters)
>mm_chr12_41571073_41572138
Length = 1066
Score = 1220 bits (631), Expect = 0.0
Identities = 655/663 (98%), Gaps = 2/663 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgccgcttac-agataagtctgatgagaagacatttagtgtaggcactttaa 63
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgccgtttacaagataagtctgatgagaagacatttagtgtaggcactttaa 264
Query: 64 atctcttactcagacctttctttaaatgaatggagttaaatttgcttattaatataatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctcttactcagacctttctttaaatgaatggagttaaatttgcttattaatataatgt 324
Query: 124 tgcacaatattaaaagttactgatctaaaaacgccagatgttacatgaagtatggggctg 183
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 325 tgcacaatattaaaagttactgatct-aaaacgccagatgttacatgaaatatggggctg 383
Query: 184 agtctcattaaaacgtttctcatttgaaagtggtaaattgtgaaaaagactccttttgta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtctcattaaaacgtttctcatttgaaagtggtaaattgtgaaaaagactccttttgta 443
Query: 244 cctttttatgttcaccttttttatgtagtttaatcttaaaaccaatacgatattgtcaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctttttatgttcaccttttttatgtagtttaatcttaaaaccaatacgatattgtcaag 503
Query: 304 caatagaatgcgtgataatgttgtataccttttattctgaatacttgatactctgagaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatagaatgcgtgataatgttgtataccttttattctgaatacttgatactctgagaaa 563
Query: 364 gctgatcatgtctgggcacatactaacacaacggccatttcttgagacttcaggaaagaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctgatcatgtctgggcacatactaacacaacggccatttcttgagacttcaggaaagaa 623
Query: 424 ggtgaagacctcagctctccccttgagcagaatgttgagctcctatcttcagatttaaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggtgaagacctcagctctccccttgagcagaatgttgagctcctatcttcagatttaaag 683
Query: 484 gctaaagcaggctggttggttggagtagatacttaagggttgcaaggattgggaacggaa 543
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 gctaaagcaggctggttggttggagtagatacttaagggtttcaaggattgggaacggaa 743
Query: 544 gttgttttgttctttaaacaaaatacttgtttgacatctgacagctgtctccatccttaa 603
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 744 gttgttttgttctttaaacaaaatacttctttgacatctgacagctgtctccatccttaa 803
Query: 604 ctctgctttgtgaacggttgctgaatcttcaagcgtcctgacaccatgctatctactgca 663
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 804 ctctgctttgtgaacggttgctgaatctttaagcatcctgacaccatgctatctactgca 863
Query: 664 tta 666
|||
Sbjct: 864 tta 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_f01.g1 MSMg01no336_f01.g1 CHROMAT_FILE:
MSMg01no336_f01.g1 PHD_FILE: MSMg01no336_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:21 2005
(591 letters)
>mm_chr12_41670466_41671455
Length = 990
Score = 998 bits (516), Expect = 0.0
Identities = 537/544 (98%), Gaps = 1/544 (0%)
Strand = Plus / Minus
Query: 1 cagatgcttgctggacatgtccttataaggaggggaggtttaacctgtaagctggccacc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 543 cagatgcttgctggacatgtccttataagga-gggaggtttaacctgtaagctggccacc 485
Query: 61 aggttacaagtctacttgaagggtggcagaagggatggttgcagggctgtgtgcaccgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggttacaagtctacttgaagggtggcagaagggatggttgcagggctgtgtgcaccgcg 425
Query: 121 acatgcaaacccggagcagggaggaagcagtccaactcctgctggtcacaggacaagatt 180
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 424 acatgcaaacccggagccgggaggaagcagtccaactcctgctggtcgcaggacaagatt 365
Query: 181 ttcggggcttggacacatcccaacctcactcttgttctgtacaggttcccccagtcacat 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 364 ttcggggcttggacacatcccaacctcactcttgttctgtacaggttcagccagtcacat 305
Query: 241 ggcttttgggtcccacaatatgtgtatcgaatgtcaagataaacctcattgcacacgaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggcttttgggtcccacaatatgtgtatcgaatgtcaagataaacctcattgcacacgaac 245
Query: 301 tgaaaacaattaataaaaaggcatgcctctctcctgtgcatacaaagcgcttcggtgatt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 244 tgaaaacaattaataaaaaggcatgcccctctcctgtgcatacaaagcgcttcggtgatt 185
Query: 361 ctggtgtacaagaaagtccgagaatcatttgtgagtgttcatttttaacataaattttat 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ctggtgtacaggaaagtccgagaatcatttgtgagtgttcatttttaacataaattttat 125
Query: 421 ccatgcttttaaatagaaataaaacggcccatgaatccactcttggcatagaaatggaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ccatgcttttaaatagaaataaaacggcccatgaatccactcttggcatagaaatggaaa 65
Query: 481 tgtgcaataggtgattcaagcaaggcagaaagaagtaaaagctaactgcctggccacaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgtgcaataggtgattcaagcaaggcagaaagaagtaaaagctaactgcctggccacaca 5
Query: 541 cccc 544
||||
Sbjct: 4 cccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 990
Length adjustment: 10
Effective length of query: 581
Effective length of database: 980
Effective search space: 569380
Effective search space used: 569380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
