Query= MSMg01no336_f17.b1 MSMg01no336_f17.b1 CHROMAT_FILE:
MSMg01no336_f17.b1 PHD_FILE: MSMg01no336_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:24 2005
(506 letters)
>mm_chr12_92296103_92297008
Length = 906
Score = 924 bits (478), Expect = 0.0
Identities = 496/502 (98%), Gaps = 1/502 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtcatgcgtctatccattatctttattctcaggcctaagaactgtactttctg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcatgggtctatccattatctttattctcaggcctaagaactgtactttctg 264
Query: 65 ggaatttagtcatttcccctgacattccaattgtaatggacgcagcacccctctttctgt 124
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaatttggtcatttcccctgacattccaattgtaatggacgcagcacccctctttctgt 324
Query: 125 tcaaattctacagtttctgggatcagatcttgacccccaaataacaatggtcacatgctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaaattctacagtttctgggatcagatcttgacccccaaataacaatggtcacatgctc 384
Query: 185 caaggcaggctggtcaagtcaccaagctccacttcctcagagccatgcatggctacctct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 caaggcaggctggtcaagtcaccaagctccacttcctcagagccatgcatggttacctct 444
Query: 245 ttctcactcattagtttctagtcttctcactttggggggttagattttctctacgtttat 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctcactcattagattctagtcttctcactttggggggttagattttctctacgtttat 504
Query: 305 tgtcctctttatcttaatttgaattctcatctcttctttttttatgtaagcatctaagaa 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 tgtcctctttatcttaatttgaattctcatctcttctttttttatgtaagtatctaagaa 564
Query: 365 cttaaatttctcacgaagtacccttctgctgatctgacatacttcattatcattccattc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttaaatttctcacgaagtacccttctgctgatctgacatacttcattatcattccattc 624
Query: 425 tatacattttacaattcccactacaatttatgttttgaattgtgggctctttggaaggtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatacattttacaattcccactacaatttatgttttgaattgtgggctctttggaaggtt 684
Query: 485 gcactgataattccaaatgccc 506
||||||||| ||||||||||||
Sbjct: 685 gcactgata-ttccaaatgccc 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_f17.g1 MSMg01no336_f17.g1 CHROMAT_FILE:
MSMg01no336_f17.g1 PHD_FILE: MSMg01no336_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:24 2005
(516 letters)
>mm_chr12_92471415_92472330
Length = 916
Score = 936 bits (484), Expect = 0.0
Identities = 508/516 (98%)
Strand = Plus / Minus
Query: 1 ttcacgagaggtttaatgacgagtatggtgtgcacagtgtcttccttatccctcaaaacc 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttcacgagaggtttaatgacaagtatggtgtgcacagtgtcttccttatccctcaaaacc 657
Query: 61 aagccatccttcactacccatgaaatgtagtatggaaaagagaaccagatctggaggggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aagccatccttcactacccatgaaatgtagtatggaaaagagaaccagatctggaggggc 597
Query: 121 tcggtgcttgctcctagatatcagtgtgattaaatctcaagtgagacttgaaatgctatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcggtgcttgctcctagatatcagtgtgattaaatctcaagtgagacttgaaatgctatg 537
Query: 181 gactggctgaagcccgatctgataaatgctgcactgttgtgttctccctgttgcaacaat 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gactggctgaagcccgatcagataaatgctgcactgttgtgttctccctgttgcaacaat 477
Query: 241 tctagtcagcatatttatctccatatttagaaggatcgatcatttctcaattaatggctg 300
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 476 tctagtcagtatatttatctccatatttagaaggatcaatcatttctcaattaatggctg 417
Query: 301 tcatgaagtgacaaataaaatgactgtcccatgggtgtttgcattctttgaaggtagaca 360
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 416 tcatgaggtgacaaataaaatgactgccccatgggtgtttgcattctttgaaggtagaca 357
Query: 361 gtttacaagtggagactctggccctgctatactctacttgacttacccctcacataggag 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gtttacaagtgtagactctggccctgctatactctacttgacttacccctcacataggag 297
Query: 421 gatgaagtattactttcagccatggcgtgagcacactcacacagggcattgtgcttagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gatgaagtattactttcagccatggcgtgagcacactcacacagggcattgtgcttagct 237
Query: 481 ggtcttaggagcgccgttgttctttcttcctccact 516
||||||||||||||||||||||||| ||||||||||
Sbjct: 236 ggtcttaggagcgccgttgttcttttttcctccact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
