Query= MSMg01no336_j11.b1 MSMg01no336_j11.b1 CHROMAT_FILE:
MSMg01no336_j11.b1 PHD_FILE: MSMg01no336_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:41 2005
(510 letters)
>mm_chr12_33455830_33456739
Length = 910
Score = 839 bits (434), Expect = 0.0
Identities = 496/534 (92%), Gaps = 29/534 (5%)
Strand = Plus / Minus
Query: 5 gaattcagatgttccggaactctgagtaggtgaaaagct-tatttctcttattttaagtt 63
||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 801 gaattcagatgttatggaactctgagtaggtgaaaagctct-tttctcttattttaagtt 743
Query: 64 ggttcccttgagaagttgctaggaatgcatttaggcttatcattagagtgtgtgttcact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggttcccttgagaagttgctaggaatgcatttaggcttatcattagagtgtgtgttcact 683
Query: 124 aaatgcaccattttcttggctgattactaacttggtaaagaaataggccatacttaattt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaatgcaccattttcttggctgattactaacttggtaaagaaataggccatacttaattt 623
Query: 184 aagctaccatcattcacagacatttgaataacttttccctattaac-------------- 229
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 622 aagctaccatcactcacagacatttgaataacttttccctattaactaggttctgatgta 563
Query: 230 -------------taggttctgatgtaacatttatatacatagttttgcagttatacatg 276
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acacttatatacataggttctgatgtaacatttatatacatagttttgcagttatacatg 503
Query: 277 tacttctgtggataaatgttagaagtagaaacattaatttatttaggacaaaagtaagga 336
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 tacttctgtggataaatgttagaagtagaaacattagtttatttaggacaaaagtaagga 443
Query: 337 taactgcttaaagcaatgattgtcaacctgtaggtcatgactcctttgggcataaaatga 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 taactgcttaaagcaatgattgtcaacctgtaggtcatgactcctttgggcataaaatga 383
Query: 397 cattctcacaaggattgcctaagagcattggaaaacacagatattacattacaatttgta 456
|||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct: 382 cattctcacaagtattgccaaagagcactggaaaacacagatattacactacaatttgta 323
Query: 457 acagtagcaaaattacagttataaagtagcagtgaaaataattttatgatcggg 510
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 acagtagcaaaattacagttatgaagtagcagtgaaaataattttatgatcggg 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_j11.g1 MSMg01no336_j11.g1 CHROMAT_FILE:
MSMg01no336_j11.g1 PHD_FILE: MSMg01no336_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:41 2005
(233 letters)
>mm_chr12_33321168_33321800
Length = 633
Score = 371 bits (192), Expect = e-107
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 1 caaattagtaagaaaagtaaaagaagcctgcagtgtttcaaaggccctgcatttcttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaattagtaagaaaagtaaaagaagcctgcagtgtttcaaaggccctgcatttcttttg 260
Query: 61 aatgttaaaaggcaactgaggtttgttgctaacctcagccaagtatggcctgctgtaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgttaaaaggcaactgaggtttgttgctaacctcagccaagtatggcctgctgtaata 320
Query: 121 aatagctgcccattcagaaagaagcttacagaccactttattcatatatatatatatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagctgcccattcagaaagaagcttacagaccactttattcatatatatatatatata 380
Query: 181 tatatatatata 192
||||||||||||
Sbjct: 381 tatatatatata 392
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 191 tatatatatatatatatatatatatatat 219
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 189 tatatatatatatatatatatatatatat 217
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 187 tatatatatatatatatatatatatatat 215
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 185 tatatatatatatatatatatatatatat 213
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 183 tatatatatatatatatatatatatatat 211
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 181 tatatatatatatatatatatatatatat 209
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 179 tatatatatatatatatatatatatatat 207
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 177 tatatatatatatatatatatatatatat 205
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 175 tatatatatatatatatatatatatatat 203
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 173 tatatatatatatatatatatatatatat 201
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 171 tatatatatatatatatatatatatatat 199
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 169 tatatatatatatatatatatatatatat 197
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 167 tatatatatatatatatatatatatatat 195
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 56.8 bits (29), Expect = 1e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 165 tatatatatatatatatatatatatatat 193
|||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatatat 364
Score = 54.9 bits (28), Expect = 4e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 164 atatatatatatatatatatatatatat 191
||||||||||||||||||||||||||||
Sbjct: 391 atatatatatatatatatatatatatat 364
Score = 54.9 bits (28), Expect = 4e-12
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 193 tatatatatatatatatatatatatata 220
||||||||||||||||||||||||||||
Sbjct: 392 tatatatatatatatatatatatatata 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 17
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space: 139776
Effective search space used: 139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
