BAC Information

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BAC

Clone NameMSMg01-336P06
Chromosome12 (Build37)
Map Location 84,653,296 - 84,653,808
singlet/doubletsinglet
Overlap geneDpf3
Upstream geneRgs6
Downstream geneWdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336P06.T7 (MSMg01no336_p06.b1)MSMg01-336P06.TJ (MSMg01no336_p06.g1)
ACCAG451848AG451849
length729742
length of high quality
(start - end)		531 (44 - 574)86 (72 - 157)
definitionCHROMAT_FILE: MSMg01no336_p06.b1 PHD_FILE: MSMg01no336_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:10 2005CHROMAT_FILE: MSMg01no336_p06.g1 PHD_FILE: MSMg01no336_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:10 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATTTTCCCACTTGGACTTGTGAGCATTACATGAGATGATGTGTGA
AAACTGCCAGGCACCTAATAGATTTTCCATCATTCCCTTCCCTCTCGCCT
CGCCTGCGTGCAAAACCACTTCATTCCTAGTGAAACGGGAGGAAAATCAA
AGCCCTAAATAAATAAGCTTTCCCAAGAAACAGAGATAAACTCACGAAGC
CACGTTCATGCCACATCCACAGGAATGTCACCTGGTCCTCGTGTGCCTCT
GGGCAAGACAGCACCTGCCTTATAGGGTTATTGGAACGAATGGATGAGCT
GAGAATAGCGGTCTGAACACTGCACCTGTGACACTCGAGATATGCTAGAG
CGAATGCTATGGCTGTCACCAGTACTGGTCAGCCTGTAGAACTCCTCAAT
CCTGAACATCCTATGCAATTATGGCAGAAGTGTGCAAGAAATCGGAGAAG
CTCAGACAGAGTCAGCATGTGGATAGTCAGCCCTGGGAAAATGGCTCTGT
GAATAGGAGAGGGCACCCTTGGCTGGAGTCCAGGCCACTTCTTTCTCTCC
CCAGGTTTCATGCATCCATCCTATTCCCGGTTACTCGAGAGGTTCTCCCA
GGGCAATGGGCCTAATGTTGCCCCAAAGGGAGCCCTGGGTATATAATTTC
CCCCAAGTGAGTAATCCTTTAAGGCAGGG

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTAAACGGAAGAAAAGGAACCTGTGA
GCTACTTATGGNGGAAGAGCCAGTTAATGCAGTATGTGTTAAGAGACAAG
GGGTTTGGGCCTGGGCACCATCGTTCAACCACTTTTGGGNAAATGGAAAG
GANNNNTNNNTTTTTTTCAAGAAAAACACCTACCAAAAAAAACACCCTTT
TTTTTCTCTTCCCTTCCTCCTCCTTTTTTTTTTCTACCTCGTTTCTTTAT
TTTTCTCTCCTTTACCAAACACACCTTTCCCCCCCCCCCCCCGACCCGAC
TTTTTCTTTCTTTTTCTCTTTTTTTTTTCCCACCTTTCTTCTCTTCCTTT
CGCCCCTCCCTCTTCTCCTCCTTTTTCTCTCTCACCCCATTTTCTCCTCT
CCCTCCTTTTTCTCCCCCGCTTTATATTTTTTTTCTATTGTCCCTTTATT
TCCTCTCCTCGCCCCCCTCCCTTCCTTTTTTTTCTTTTATATTTTACCCT
TACACCACCTTACTTATACTTTCTATTACCCCCTCCCTTTTTCTCCCCCT
TCCCATTTTCTTTTTATTTTTCCCTCCCTCTCTCTTTTTTTTCCTCTTTT
TATTTCTTTTTTCTCTTTTCCTCCCCCATTTCCGACTATATTTTTTTCCC
CTATATTTTATTTTTCTTCTCTCCTCTTTTCTCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_p06.b1 MSMg01no336_p06.b1 CHROMAT_FILE:
MSMg01no336_p06.b1 PHD_FILE: MSMg01no336_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:10 2005
         (531 letters)



>mm_chr12_84653078_84654008
          Length = 931

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 19  ccacttggacttgtgagcattacatgagatgatgtgtgaaaactgccaggcacctaatag 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ccacttggacttgtgagcattacatgagatgatgtgtgaaaactgccaggcacctaatag 278

                                                                       
Query: 79  attttccatcattcccttccctctcgcctcgcctgcgtgcaaaaccacttcattcctagt 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 attttccatcattcccttccctctcgcctcgcctgcgtgcaaaaccacttcattcctagt 338

                                                                       
Query: 139 gaaacgggaggaaaatcaaagccctaaataaataagctttcccaagaaacagagataaac 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaaacgggaggaaaatcaaagccctaaataaataagctttcccaagaaacagagataaac 398

                                                                       
Query: 199 tcacgaagccacgttcatgccacatccacaggaatgtcacctggtcctcgtgtgcctctg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcacgaagccacgttcatgccacatccacaggaatgtcacctggtcctcgtgtgcctctg 458

                                                                       
Query: 259 ggcaagacagcacctgccttatagggttattggaacgaatggatgagctgagaatagcgg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggcaagacagcacctgccttatagggttattggaacgaatggatgagctgagaatagcgg 518

                                                                       
Query: 319 tctgaacactgcacctgtgacactcgagatatgctagagcgaatgctatggctgtcacca 378
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tctgaacactgcgcctgtgacactcgagatatgctagagcgaatgctatggctgtcacca 578

                                                                       
Query: 379 gtactggtcagcctgtagaactcctcaatcctgaacatcctatgcaattatggcagaagt 438
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 579 gtactggtcagcctgtagaactcctcaatcctgaacattctatgcaattatggcagaagt 638

                                                                       
Query: 439 gtgcaagaaatcggagaagctcagacagagtcagcatgtggatagtcagccctgggaaaa 498
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gtgcgagaaatcggagaagctcagacagagtcagcatgtggatagtcagccctgggaaaa 698

                                            
Query: 499 tggctctgtgaataggagagggcacccttggct 531
           |||||||||||||||||||||||||||||||||
Sbjct: 699 tggctctgtgaataggagagggcacccttggct 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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