Query= MSMg01no337_b08.b1 MSMg01no337_b08.b1 CHROMAT_FILE:
MSMg01no337_b08.b1 PHD_FILE: MSMg01no337_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:20 2005
(615 letters)
>mm_chr12_56511808_56512822
Length = 1015
Score = 944 bits (488), Expect = 0.0
Identities = 573/624 (91%), Gaps = 43/624 (6%)
Strand = Plus / Plus
Query: 5 gaattcaacattaaatcaaagcaaagctgttgttcagagagattct--ttttttttttt- 61
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 232 gaattcaacattaaagcaaagcaaagctgttgttcagagagattcttattttttttttta 291
Query: 62 aagatttattttattaatatatgtaagtacactgtagctgtcttcagacactccagaaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aagatttattttattaatatatgtaagtacactgtagctgtcttcagacactccagaaga 351
Query: 122 gggagtcagatcttgttgtggatggttgtgagccaccatgtggttgctgggatttgaact 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gggagtcagatcttgttgtggatggttgtgagccaccatgtggttgctgggatttgaact 411
Query: 182 ttggaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagcccctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttggaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagcccctt 471
Query: 242 ctgctcagtttcttttgttccttctcctccattggccccttaaatgttgtcacttgccgg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgctcagtttcttttgttccttctcctccattggccccttaaatgttgtcacttgccgg 531
Query: 302 acgtggtggtgtcacatgcctttaatcccagcactcgggaggcagaggcagaggcaggct 361
||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 532 acgtggtggtg---catgcctttaatcccagcactcgggaggcagaggcag------gct 582
Query: 362 gatttctgagttcaaggcctggtctacagagtgagttccaggacaaccacacagagaaac 421
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 583 gatttctgagttcaaggtctggtctacagagtgagttccaggacagccacacagagaaac 642
Query: 422 cctgtctcgaaaaaccaaaaaaaaaaaataaaaaaaaaaaaataaaaaaatgttgtcact 481
||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 643 cctgtctagaaaaaccaaaaaaaaaaaa-aaaaa--------------------gtcact 681
Query: 482 tatcatgctttttttttgggcctttgcttcctctttgccatctggttaatgtcatccctt 541
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatcatgcttttttcttgggtctttgcttcctctttgccatctggttaatgtcatccctt 741
Query: 542 gagggcgtcacttcctaccttacttacctgctagtcattcacct------ggtt--t--c 591
|||||| ||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 742 gagggcatcacttcctaccttacttacctgctagtcattcacctaaaccaggtgaatgac 801
Query: 592 ttagccattcctcccatttctcag 615
||||||||||||||||||||||||
Sbjct: 802 ttagccattcctcccatttctcag 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_b08.g1 MSMg01no337_b08.g1 CHROMAT_FILE:
MSMg01no337_b08.g1 PHD_FILE: MSMg01no337_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:20 2005
(466 letters)
>mm_chr12_56544727_56545592
Length = 866
Score = 702 bits (363), Expect = 0.0
Identities = 403/439 (91%), Gaps = 36/439 (8%)
Strand = Plus / Minus
Query: 28 agggccaaggagatggcacagatctagcatggggatctgtgttcagtttccaaggcctac 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agggccaaggagatggcacagatctagcatggggatctgtgttcagtttccaaggcctac 807
Query: 88 atagtataaagggaaccagctcctgcaagttgtctttgaccttagacagtgctctgtgtc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 atagtataaagggaaccagctcctgcaagttgtctttgaccttagacagtgctctgtgtc 747
Query: 148 tctgtctctctccctttctatgtctctccttgtctctctctgtctctctctctctctgtc 207
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 746 tctgtctctctccctttctatgtctctccttgtctctctctg--tctctctctctctgtc 689
Query: 208 tgtcacacacacacacacacacacacacacacacacacacacacacacacacacactgac 267
||| |||||||||||||||||||||||
Sbjct: 688 tgt----------------------------------cacacacacacacacacactgac 663
Query: 268 tgatgtacttccttttgatccccacacctgcctctgtttccttcaatgtagtctatgcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgatgtacttccttttgatccccacacctgcctctgtttccttcaatgtagtctatgcca 603
Query: 328 ggtgggtctcccccacaccagccagcaagtttaaattcatcagatctccacccccttttt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggtgggtctcccccacaccagccagcaagtttaaattcatcagatctccacccccttttt 543
Query: 388 gtttttaatgaatccaccaggacatagagttgatgcatgcctccctctcatgatgcatcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtttttaatgaatccaccaggacatagagttgatgcatgcctccctctcatgatgcatcc 483
Query: 448 ctcccgtctgtctcaggtc 466
|||||||||||||||||||
Sbjct: 482 ctcccgtctgtctcaggtc 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
