BAC Information

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BAC

Clone NameMSMg01-337J21
Chromosome12 (Build37)
Map Location 65,371,744 - 65,372,134
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302
Downstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337J21.T7 (MSMg01no337_j21.b1)MSMg01-337J21.TJ (MSMg01no337_j21.g1)
ACCAG452346AG452347
length769782
length of high quality
(start - end)		526 (40 - 565)462 (70 - 531)
definitionCHROMAT_FILE: MSMg01no337_j21.b1 PHD_FILE: MSMg01no337_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:03 2005CHROMAT_FILE: MSMg01no337_j21.g1 PHD_FILE: MSMg01no337_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAATAGATGCATTTCTAATGTGCTGAGAAGCACTTAAAGAAATTCTCAAA
TCCTTAGTCATCAGGTAAATGCAAATCAAAACAATCTTGAAATGTCACCA
TACACCAATTGGAATTGCTAAAAATCAAAAACTCAAGGGACAGCACATGC
TGAAGAGGATGTGGAGAAAATATAACACTTCTCCACCTCTGGTGGTATTA
CAAACTGTTACAACCACTCTGGAAATCAATCTGGTGGTTTTTCAGAAAAT
TTGAAATAGCTCTACCTGAAGACCCAGCTATCTACCCTGGAAATATACCC
AAAAGATGTTCCACCATCCCACAACAACATGTGCTCTACTATGTTCATAA
CAGCCTTATTTGTAATAGCCAGAAACTGGAAACAATCCAGATGTCCTTCA
GCCAAAGAATGGATATAGAAAATGTGGTTCATTTACACAAGGAACATTAA
AAAATGAGGACAAACATGAATTTTGCAGGCAAATGGATAGAATTAGAAAA
TATGCTGAGTAATGTAGCTCAGACCCAGAAGGACATGCATGGTGTGTACT
CACTGATTAGTCGATATTAGCCAAAAAGTACAAAACATATAGGGTAATAC
CACAGACCCTAAGAAGTCTAACAAGCAGAAAAGCCCCAGTGAAGATGCTT
TCAATTCCCCTTTAAAGGGGAAAAGACATAATCACCTGGGAGAACCAAAA
AAAGGGAGGGAACTGTGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAAATAAGGAGACTTTTTGATGATCAATAT
TCCTATAAATTAGACAAGGAGCTATCACCCATGTGAGAATAGACTGTTTG
ATGATTTAACTGTATTAAAGTCACCCATGCTTCTATAAGTAATCCTTTAA
CCACAGTTCCATAAGGGCCCCAGTCAGTTCAATGTTTCAATGTGGTAGAC
TTGGGTGGAATAGTTTGTTTAGTCCTTGCTAAGTATCCTATGTGAGATGA
ATAGGCATTCAGACATCTTCCTAGGGAAACTCACATAACACTGAATGTTC
CACTCTATGCTCTCCAAGTTTGGGTTAATATTGTTGAAAGCAATGTTTTG
ACCAGAAGGCTGGTAGTAAGTTAGGTCACAATTGAGTCCACCAATTGCTA
GGGAATTCATAGAATCCAGATCCACCACTGGCAGTTCAGGTGCATCAGTC
CATCACACTGAGGCAGATGTCTTTGTCTAGCATAGGTTCAGAGCTTGTTC
CCTCAGCATTAGCCCGGGGAATAGCACTGTTGTTTAAAAGTGTGAAAAGC
TGGTAAAAAAAATTATTTTTGGTTCCAGGCTGATGTTAAAAGTTGAGTTG
CTTCCTAATTTTACCGGTGGAAAATACCTCTTATTTAAAAACCACGCCTA
ACTTTGGGGAGGATTATTTTGAGACTTGGAACTTTCCCCCGGATTTTAGG
GCCCCCCCCTTATGTTTGGGATAGGCAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_j21.g1 MSMg01no337_j21.g1 CHROMAT_FILE:
MSMg01no337_j21.g1 PHD_FILE: MSMg01no337_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:03 2005
         (462 letters)



>mm_chr12_65371273_65372134
          Length = 862

 Score =  756 bits (391), Expect = 0.0
 Identities = 391/391 (100%)
 Strand = Plus / Minus

                                                                       
Query: 72  agactgtttgatgatttaactgtattaaagtcacccatgcttctataagtaatcctttaa 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 agactgtttgatgatttaactgtattaaagtcacccatgcttctataagtaatcctttaa 803

                                                                       
Query: 132 ccacagttccataagggccccagtcagttcaatgtttcaatgtggtagacttgggtggaa 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ccacagttccataagggccccagtcagttcaatgtttcaatgtggtagacttgggtggaa 743

                                                                       
Query: 192 tagtttgtttagtccttgctaagtatcctatgtgagatgaataggcattcagacatcttc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tagtttgtttagtccttgctaagtatcctatgtgagatgaataggcattcagacatcttc 683

                                                                       
Query: 252 ctagggaaactcacataacactgaatgttccactctatgctctccaagtttgggttaata 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctagggaaactcacataacactgaatgttccactctatgctctccaagtttgggttaata 623

                                                                       
Query: 312 ttgttgaaagcaatgttttgaccagaaggctggtagtaagttaggtcacaattgagtcca 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttgttgaaagcaatgttttgaccagaaggctggtagtaagttaggtcacaattgagtcca 563

                                                                       
Query: 372 ccaattgctagggaattcatagaatccagatccaccactggcagttcaggtgcatcagtc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccaattgctagggaattcatagaatccagatccaccactggcagttcaggtgcatcagtc 503

                                          
Query: 432 catcacactgaggcagatgtctttgtctagc 462
           |||||||||||||||||||||||||||||||
Sbjct: 502 catcacactgaggcagatgtctttgtctagc 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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