Query= MSMg01no337_k05.b1 MSMg01no337_k05.b1 CHROMAT_FILE:
MSMg01no337_k05.b1 PHD_FILE: MSMg01no337_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:04 2005
(591 letters)
>mm_chr12_120486531_120487521
Length = 991
Score = 1104 bits (571), Expect = 0.0
Identities = 583/587 (99%)
Strand = Plus / Minus
Query: 5 gaattcaattagaataccttaaattttgtgatgacttcattctctagaggccatgtgatc 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattcaattagaataatttaaattttgtgatgacttcattctctagaggccatgtgatc 732
Query: 65 atgagaaaatgctgaaagagaaacttttggccctaggctcattgacttattgagctttag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atgagaaaatgctgaaagagaaacttttggccctaggctcattgacttattgagctttag 672
Query: 125 aagggcctgtagctgtgaaatgatgcatgactgcctccaaataccacagtggctcaacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aagggcctgtagctgtgaaatgatgcatgactgcctccaaataccacagtggctcaacag 612
Query: 185 ataaactatgtcaatgtgaaacgttgtctttattatatctgcagatacctctgttggata 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 611 ataaactatgtcaatgtgaaacgttgtctttataatatctgcagatacctctgttggata 552
Query: 245 gacccagctttaggccttaaaaatcactacacttttgaaacaatagcatataatgcttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gacccagctttaggccttaaaaatcactacacttttgaaacaatagcatataatgcttat 492
Query: 305 taaacatccatttagtttcctacgtacttaaaagcttaaacatcttaaactttaagtaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 taaacatccatttagtttcctacgtacttaaaagcttaaacatcttaaactttaagtaaa 432
Query: 365 aggtaatattataaacatgtgtctttttgtaaacacgtaagtcaatatgtccatcctaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aggtaatattataaacatgtgtctttttgtaaacacgtaagtcaatatgtccatcctaca 372
Query: 425 gttgtatatcaagctagatagtgatatcagactggagatttaagaataactttgtctgac 484
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gttgtatatcaagctagataatgatatcagactggagatttaagaataactttgtctgac 312
Query: 485 aaagaaggcataaaattagattgtcgtcaaagatgcttcggttacaaatttctataaaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaagaaggcataaaattagattgtcgtcaaagatgcttcggttacaaatttctataaaga 252
Query: 545 ccagctcactgcatctgttactatgcataaataagaaaatggatact 591
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccagctcactgcatctgttactatgcataaataagaaaatggatact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_k05.g1 MSMg01no337_k05.g1 CHROMAT_FILE:
MSMg01no337_k05.g1 PHD_FILE: MSMg01no337_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:05 2005
(485 letters)
>mm_chr12_120301784_120302664
Length = 881
Score = 872 bits (451), Expect = 0.0
Identities = 475/485 (97%), Gaps = 4/485 (0%)
Strand = Plus / Plus
Query: 1 tttctattctgagtctgtgttctgcaattaagaggcaacactgaatggaagaaagacttt 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tttctattttgagtctgtgttctgcaattaagaggcaacacagaatggaagaaagacttt 260
Query: 61 tccctaaaggagctaactgacatggctgggaggcagaaatgaaagcagataatgcctaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctaaaggagctaactgacatggctgggaggcagaaatgaaagcagataatgcctaag 320
Query: 121 gaacaagtgtgatattaaatagacagaaagcccatcttccttcccagcccagggaatgag 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 gaacaagtgtgatattaaatagacagaaagcccatcttcc----cagcccagggaatgag 376
Query: 181 cctgctcttgtttcaattctattgctctgatgaaatatcctaacaaaagcaacttaggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cctgctcttgtttcaattctattgctctgatgaaatatcctaacaaaagcaacttaggaa 436
Query: 241 agagtctgtttatttcagcttacagtttcaggttatatacaatctgtcattgtgggtaag 300
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agagtccgtttattttagcttacagtttcaggttatatacaatctgtcattgtgggtaag 496
Query: 301 ccatagtagcaggagtttgaaacagctggttatactttatctataaccaagaagtagaga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acatagtagcaggagtttgaaacagctggttatactttatctataaccaagaagtagaga 556
Query: 361 agaactcattaatgaatgtgtgcttgtgcttagctcattttccggtgcttacacagttca 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 557 agaactcattaatgaatgtgtgcttgtgcttagctcattttctggtgcttacacagttca 616
Query: 421 ggactcactatctaaggaatggtggcacccacagtggaagggtcttcccacctccattaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggactcactatctaaggaatggtggcacccacagtggaagggtcttcccacctccattaa 676
Query: 481 cttag 485
|||||
Sbjct: 677 cttag 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 881
Length adjustment: 10
Effective length of query: 475
Effective length of database: 871
Effective search space: 413725
Effective search space used: 413725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
