BAC Information

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BAC

Clone NameMSMg01-337K08
Chromosome12 (Build37)
Map Location 61,690,292 - 61,690,776
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337K08.T7 (MSMg01no337_k08.b1)MSMg01-337K08.TJ (MSMg01no337_k08.g1)
ACCAG452368AG452369
length749767
length of high quality
(start - end)
514 (46 - 559)485 (75 - 559)
definitionCHROMAT_FILE: MSMg01no337_k08.b1 PHD_FILE: MSMg01no337_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:05 2005CHROMAT_FILE: MSMg01no337_k08.g1 PHD_FILE: MSMg01no337_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTCTTTTTCAGTATTAGGTATTTATTATATTTATATATCCAAT
GCTATCCCAAAAGACCCCCCACCCTCCCACACCCATTTCACCACCACCCA
CTCCCACCTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAGGTCT
GCATGACCAATGGGCCTCTCTTTCCACTGATGGCCGAACAGGCCATTTTC
TGATACATATGCAGCTAGAGACAAGAGCTCTGGGGGTGGGGGGAGGGAGG
TACTGGTTAGTTCACATTGTTGTTCCACCTATAGGGTTGCAGATCCCCCC
CAGCTCCCTAGGTACTTCTTCCAGCTCCTCCATTGGGGACCCTGTGATCC
ATCCAATAGCTGACTGTGAGCATCTACTTCTGTGTTTGCTAGGCCCTGGC
ATAGTCTCACAAGAGACAGCTATATCAGGGTTCTTTCAGCAAAATCTTGG
AGTGTATTCAATGGTGTCAGTGTTTGGAAGCTGATTATGTAATGGATCCC
CAGGTATGGTAGTCCCTAGATGGTCCATCCTTTCGTCTCAGCTCCAAACT
CTGTCTCTGTAGCTCCTTCCATGGGCACCTTGCTCCCAATTCATAGAAGG
CGCAAAGTATCCACACCTTGGTGGTTGCCTCTCTTAAACTTCATGTGTTT
CTCAAATTGCACCCAATATCTTGGCGATTCAAATCTTCTGGGCTAAACN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAATGTGACAAACCTGAACACTCAGA
AGAGGCAAATCTCTTTCACACCTTTAAACTAGAAACATCAAAAGCATCTG
GAAATTGAATTTTCACAGTAGGGGATGGGAAGGAAAGTTAAGAACAGAAC
GATATAGAACTTAATTATCATAATTCACTGCAGGTGTTGAAATGTTCACT
ACAGATACTCTTATAATGAGTATCAAACTTTGTATTCGCAAGTTGCTGAA
AGGTCTTGATTAAAAATCATGCATTTTACATAAGAGGTGAAATAAACCGA
GGTTAATTTTTGCCGTATATTGTTGCATGCATCATAAACTACTTACAATT
AGTTTTAAAATAACACTAAACCCTGAAACAATTGCATAAATATATACATA
CCTGTTCAGTCAGAATTTCATACGAAGTTTAATAGTTTGTAATGATTTTT
ATTTTTATTTTCAGCTTAATCAGAGTTGATTGCCATAGGCAAACAAAAAC
ATAATGAATACACTTAAGTGTATAGTGAATGTTAAAAAATACAGGTTTAT
TTAGATTAAGAGTGCAGAATTTAAAGAAATACCGAAAAAAATACGTGCAA
TGGCAATGTGAAAAGAAAATTTATTTTAGCCACTCACAAATTTTTTTATT
CCTAAATTCTTTGGACCCGAAAAAATTTTTCCAAAAAATAAAATAATCCC
CCTTATTTTTGTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_k08.g1 MSMg01no337_k08.g1 CHROMAT_FILE:
MSMg01no337_k08.g1 PHD_FILE: MSMg01no337_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:05 2005
         (485 letters)



>mm_chr12_61690092_61690976
          Length = 885

 Score =  922 bits (477), Expect = 0.0
 Identities = 483/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgtgacaaacctgaacactcagaagaggcaaatctctttcacacctttaaactagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taatgtgacaaacctgaacactcagaagaggcaaatctctttcacacctttaaactagaa 626

                                                                       
Query: 61  acatcaaaagcatctggaaattgaattttcacagtaggggatgggaaggaaagttaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatcaaaagcatctggaaattgaattttcacagtaggggatgggaaggaaagttaagaa 566

                                                                       
Query: 121 cagaacgatatagaacttaattatcataattcactgcaggtgttgaaatgttcactacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaacgatatagaacttaattatcataattcactgcaggtgttgaaatgttcactacag 506

                                                                       
Query: 181 atactcttataatgagtatcaaactttgtattcgcaagttgctgaaaggtcttgattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atactcttataatgagtatcaaactttgtattcgcaagttgctgaaaggtcttgattaaa 446

                                                                       
Query: 241 aatcatgcattttacataagaggtgaaataaaccgaggttaatttttgccgtatattgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 aatcatgcattttacataagaggtgaaataaaccgaggttaatttttgctgtatattgtt 386

                                                                       
Query: 301 gcatgcatcataaactacttacaattagttttaaaataacactaaaccctgaaacaattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatgcatcataaactacttacaattagttttaaaataacactaaaccctgaaacaattg 326

                                                                       
Query: 361 cataaatatatacatacctgttcagtcagaatttcatacgaagtttaatagtttgtaatg 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 cataaatatatacatacctgttcagtcacaatttcatacgaagtttaatagtttgtaatg 266

                                                                       
Query: 421 atttttatttttattttcagcttaatcagagttgattgccataggcaaacaaaaacataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttttatttttattttcagcttaatcagagttgattgccataggcaaacaaaaacataa 206

                
Query: 481 tgaat 485
           |||||
Sbjct: 205 tgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)