BAC Information

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BAC

Clone NameMSMg01-337M17
Chromosome12 (Build37)
Map Location 110,927,745 - 110,928,205
singlet/doubletsinglet
Overlap genenone
Upstream geneDegs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik
Downstream geneB830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M17.T7 (MSMg01no337_m17.b1)MSMg01-337M17.TJ (MSMg01no337_m17.g1)
ACCAG452482AG452483
length771776
length of high quality
(start - end)		538 (40 - 577)462 (70 - 531)
definitionCHROMAT_FILE: MSMg01no337_m17.b1 PHD_FILE: MSMg01no337_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:17 2005CHROMAT_FILE: MSMg01no337_m17.g1 PHD_FILE: MSMg01no337_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGATGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACT
GGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGAAACACATTCACAAAGGAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAATCCTAGATA
CCCCAGATATAAGATACAATTTTCCTAACACATGAAACTTCAGAAAAATG
AAGACTGAAGTGGTGACCCTATGCCCCTCCTTAAAAGGGGAAACAAAACA
CCCTTGAAAGAGTTACGAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCAGGTCCAACCCCAAAGATGCAGTACAGTC
AAATGATCCACTTGCTAAGGGTCAGTAACTGGAACAAATTACATTTTAGA
GTTTGTTTTTATGTATTTTATTGTACTTTTATAATGGGACCATTGTGAGA
AGTAGTAAACAAATAAACAAAAAAAAATATCAACTAGGCAATGTCAAAAT
AAAATACCTCAGTAGATATGAAAATCAGTATGTGCTTTTATTTCTTTGGC
TATAGATTATTACTGTATAAATTATTGAACTTTCTACTCCTGTGCAAAAA
GGGAGTTCAAATTTTTTCATTTTTCTTTTAATAAAAATAAAGTAATTACT
CTTTCAATTAATGCTTGTTAATAAAAGGTGAATGCAATACTCAATAGACA
AGAAAAATAGCAGTTTCATTGTCATGCATTCTGTTTTTTGCCCCTTAGAG
TAGAGCAATGGGAAGAGAGTTCCTTATTCACACTTGGGGTTTAAGGTAAG
TATTCGACAGCATGCTTGTCTATGTAGTTTTTTTAAAGCTGTATTCATAT
ATGATAACTACATCACTATTTAAAGGCAGAAGACCATGTGTAGGCCCAGT
TCTAATGTGTGATGGACATGAAGCATTCCTATTCTTATAGGTCCGCCCCC
TTACTTGGAAAGATGTACCCTTAAATGGGTCGACCGAAATTTGTAAAAAA
CCTTATTCTTGAGTATTTTTCGAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m17.g1 MSMg01no337_m17.g1 CHROMAT_FILE:
MSMg01no337_m17.g1 PHD_FILE: MSMg01no337_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:17 2005
         (462 letters)



>mm_chr12_110927545_110928405
          Length = 861

 Score =  847 bits (438), Expect = 0.0
 Identities = 456/462 (98%), Gaps = 1/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggtccaaccccaaagatgcagtacagtcaaatgatccacttgctaagggtcagtaac 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcaggtccaaccccaaagatgcagtacagtcatatgatccacttgctaagggtcagtaac 260

                                                                       
Query: 61  tggaacaaattacattttagagtttgtttttatgtattttattgtacttttataatggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaacaaattacattttagagtttgtttttatgtattttattgtacttttataatggga 320

                                                                       
Query: 121 ccattgtgagaagtagtaaacaaataaacaaaaaaaaatatcaactaggcaatgtcaaaa 180
           ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 321 ccattgtgagaagtagtaaacaaataaac-aaaaaaaatataaactaggcaatgtcaaaa 379

                                                                       
Query: 181 taaaatacctcagtagatatgaaaatcagtatgtgcttttatttctttggctatagatta 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 380 taaaatacctcagtagatatgaaaatcagcatgtgcttttatttctttggctataaatta 439

                                                                       
Query: 241 ttactgtataaattattgaactttctactcctgtgcaaaaagggagttcaaattttttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttactgtataaattattgaactttctactcctgtgcaaaaagggagttcaaattttttca 499

                                                                       
Query: 301 tttttcttttaataaaaataaagtaattactctttcaattaatgcttgttaataaaaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttttcttttaataaaaataaagtaattactctttcaattaatgcttgttaataaaaggt 559

                                                                       
Query: 361 gaatgcaatactcaatagacaagaaaaatagcagtttcattgtcatgcattctgtttttt 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 gaatgcaatactcaatagacaagaaaaatagcagtttaattgtcatgcattctgtttttt 619

                                                     
Query: 421 gccccttagagtagagcaatgggaagagagttccttattcac 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gccccttagagtagagcaatgggaagagagttccttattcac 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space:   384652
Effective search space used:   384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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