Query= MSMg01no337_p12.b1 MSMg01no337_p12.b1 CHROMAT_FILE:
MSMg01no337_p12.b1 PHD_FILE: MSMg01no337_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:30 2005
(645 letters)
>mm_chr12_55185746_55186790
Length = 1045
Score = 1149 bits (594), Expect = 0.0
Identities = 636/656 (96%), Gaps = 15/656 (2%)
Strand = Plus / Plus
Query: 4 ggaattctttagcttt-caaa-gtaaggatttattttttttactttatctacagatatct 61
||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 191 ggaattcttta-cttttcaaaagtaaggattttttttttttactttatctacagatatct 249
Query: 62 ttagcttatcaccagcacaactatactataacaaacattaaatatattcctcaagaagaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttagcttatcaccagcacaactatactataacaaacattaaatatattcctcaagaagaa 309
Query: 122 acataaacctagagatggttcagcaggtaagagcactgactgctcttccgaaggtcttga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acataaacctagagatggttcagcaggtaagagcactgactgctcttccgaaggtcttga 369
Query: 182 gttcaaatcctagcaactacatggtggttcacaaccacccgtaatgagatctgacaccat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gttcaaatcctagcaactacatggtggttcacaaccacccgtaatgagatctgacaccat 429
Query: 242 cttctggtgcatctgaaatcagctacagtttacttatgtataataataaatcttt-aaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 cttctggtgcatctgaaatcagctacagtttacttatgtataataataaatcttttaaaa 489
Query: 301 aaaa---taaacctatacagaaacaaa--------tagtagatataaataaaggcaaaat 349
|||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 490 aaaaacataaacctagacagaaacaaagaaacaaatagtagatataaataaaggcaaaat 549
Query: 350 aagaactacatggaaattgttagataaatatagaattcaggaggcactgataatatgtta 409
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 aagaaatacatggaaattgttagataaatatagaattcaggaggcactgataatatgtta 609
Query: 410 tggattccacacacagagaagttaagcaggtaagttggctgagggaaagggtctccaggc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tggattccacacacagagaagttaagcaggtaagttggctgagggaaagggtctccaggc 669
Query: 470 ctgacaggcacaaggacacattggtagagaatgccctcttctactccttggaaaaagtaa 529
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 670 ctgacaggcacaaggacacattggtagagaatgccttcttctactccttggaaaaagtaa 729
Query: 530 cactttaactaatttgtccttgctattaaatataaaaatcacagctaccttaaccacaaa 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 730 cactttaactaatttgtccttgctattaaatataaaaatcacagctaccttaaccacaga 789
Query: 590 tcttaacacacacatgtgtacatgtacacgcacatacacacacacccctaactatt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tcttaacacacacatgtgtacatgtacacgcacatacacacacacccctaactatt 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_p12.g1 MSMg01no337_p12.g1 CHROMAT_FILE:
MSMg01no337_p12.g1 PHD_FILE: MSMg01no337_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:30 2005
(576 letters)
>mm_chr12_55342391_55343365
Length = 975
Score = 1021 bits (528), Expect = 0.0
Identities = 564/576 (97%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 1 cccagatgagttttaaattccagagcaattactacatccaattctgaagagccagaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cccagatgagttttaaattccagagcaattactacatccaattctgaagagccagaagga 716
Query: 61 aggatcatctgccaaggagctattagtgacgggatggctcctgcttcaaagtctgtcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 aggatcatctgccaaggagctattagtgacgggatggctcctgcttcaaagtctgtcctg 656
Query: 121 gattatctcctaaagcactcagtcgcttttcagagcatgctgtagtgtcacatgacctaa 180
||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct: 655 gattatctcctaaagtactcagtcgattttcagagcatgctgtggcgtcacatgacctaa 596
Query: 181 agagaagccaccatcttccaaacctaaggaggtagaagagaggaaggccacagattacct 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 agagaagccaccatcttcaaaacctaaggaggtagaagagaggaaggccacagattacct 536
Query: 241 cacttgtatgctacatctaatgagctgcctgaagagtaaaagcatcaaaaacattttttt 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 535 cacttgtaggctacatctaatgagctgcctgaagagtaaaagcatcaaaaaca-tttttt 477
Query: 301 tctgcttcagcaaaaacagtattaaatatcaagtttctttaagtagagtagatatttaga 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tctgctttagcaaaaacagtattaaatatcaagtttctttaagtagagtagatatttaga 417
Query: 361 ccaactcattcatggttgtttgaccattgtaaagacagaacagcactgaagctgctaact 420
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 416 ccaactcattcatggttgtctgaccattgtaaagacggaacagcactgaagctgctaact 357
Query: 421 gcatactcactgggcacggttttattgctagattgttttcaagccagtgctgccttgaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcatactcactgggcacggttttattgctagattgttttcaagccagtgctgccttgaca 297
Query: 481 atgtgttttcacagcagaaagtggcagaatgcaaagtctcccagatcctttcacagcaga 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 296 atgtgttttcacagcagaaagtggcagaatgcaaagtctcccaggtcctttcacagcaga 237
Query: 541 agtacctaataagggacgaagggaacactggctcag 576
||||||||||||| ||||||||||||||||||||||
Sbjct: 236 agtacctaataagagacgaagggaacactggctcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
